CX295876

Overview
NameCX295876
Unique NameCX295876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295876 vs. ExPASy Swiss-Prot
Match: UPL1_ARATH (E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 4.603e-39
Identity = 89/190 (46.84%), Postives = 110/190 (57.89%), Query Frame = 1
Query:   64 VREINAALEPLWLELSTCISKIESFSDSSPDLXXXXXXXXXXXXXXXXPLPAGAQNILPYIESFFVMCEKLHPAQPGSSHDFGXXXXXXXXXXXXXXXQQKTSGHVTKVDEKQIAFVRFSEKHRKLLNAFIRQNPGLLEKSFSLMLKVPRFVDFDNKRAHFRSKIKHQHDHHHS-PLRISVRRAYILEDS 630
            ++ +N ALEPLW ELS CIS  E   D +                    L  G Q +LP IE+FFV+CEK+    P                        KTS    K  +  + F +F+EKHR+LLN+FIRQNP LLEKS S+MLK PR +DFDNK+A+FRS+I+HQHD H S PLRISVRRAY+LEDS
Sbjct: 3145 MQRLNVALEPLWHELSQCISMTELQLDHTAAASNINPGDHVLGISPTSSLSPGTQRLLPLIEAFFVLCEKIQT--PSMLQQDTNVTAGEVKESSAHGSSSKTSVDSQKKTDGSVTFSKFAEKHRRLLNSFIRQNPSLLEKSLSMMLKAPRLIDFDNKKAYFRSRIRHQHDQHISGPLRISVRRAYVLEDS 3332          
BLAST of CX295876 vs. ExPASy Swiss-Prot
Match: UPL2_ARATH (E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.481e-37
Identity = 90/211 (42.65%), Postives = 116/211 (54.98%), Query Frame = 1
Query:    1 TEKDKDQQILPEKEHTAALSQVREINAALEPLWLELSTCISKIESFSDSSPDLXXXXXXXXXXXXXXXXPLPAGAQNILPYIESFFVMCEKLHPAQPGSSHDFGXXXXXXXXXXXXXXXQQKTSGHVTKVDEKQIAFVRFSEKHRKLLNAFIRQNPGLLEKSFSLMLKVPRFVDFDNKRAHFRSKIKHQHDHHHS-PLRISVRRAYILEDS 630
            T+K+ DQ+           + ++ +  ALEPLW EL  CIS  E   D +                    L  G Q++LP IE+FFV+CEK+    P                        KT     K  +  + F +F EKHR+LLN+F+RQNP LLEKSFS+MLK PR +DFDNK+A+FRS+I+HQHD H S PLRISVRRAY+LEDS
Sbjct: 3110 TDKETDQE---------EQNIMQGLKVALEPLWQELGQCISMTELQLDHTAATSNVNPGDHVLGISPTSSLSPGTQSLLPLIEAFFVLCEKIQT--PSMLQQDATVTAGEVKESSTHGSSSKTIVDSQKKIDGSVTFSKFVEKHRRLLNSFVRQNPSLLEKSFSMMLKAPRLIDFDNKKAYFRSRIRHQHDQHISGPLRISVRRAYVLEDS 3309          
BLAST of CX295876 vs. ExPASy Swiss-Prot
Match: TOM1_NEUCR (E3 ubiquitin-protein ligase TOM1-like OS=Neurospora crassa GN=B11B22.010 PE=3 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.069e-11
Identity = 42/138 (30.43%), Postives = 70/138 (50.72%), Query Frame = 1
Query:  232 ILPYIESFFVMCEKLHPAQPGSSHDFGXXXXXXXXXXXXXXXQQKTSGHVTKVDEKQIA--FVRFSEKHRKLLNAFIRQNPGLLEKSFSLMLKVPRFVDFDNKRAHFRSKIKHQHD---HHHSPLRISVRRAYILEDS 630
            +LP IES  V+C+    +   +  +                  QK     +   E +IA  F  F+E+HR++LN  +R NP L+  +FSL++K P+ ++FDNKR +F   +  ++    H   PL++ VRR ++  DS
Sbjct: 3560 LLPLIESLMVVCKNTTLSDASAVSNAN---------------SQKEMLLTSPPPEDRIAGLFFTFTEEHRRILNELVRHNPKLMSGTFSLLVKNPKVLEFDNKRNYFNRSVHSKYQQTRHSFPPLQLQVRREHVFHDS 3682          
The following BLAST results are available for this feature:
BLAST of CX295876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
UPL1_ARATH4.603e-3946.84E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis th... [more]
UPL2_ARATH1.481e-3742.65E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis th... [more]
TOM1_NEUCR1.069e-1130.43E3 ubiquitin-protein ligase TOM1-like OS=Neurospor... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05076G11SK DroRLeaf1 Citrus clementina cDNA clone C05076G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295876 ID=CX295876; Name=CX295876; organism=Citrus clementina; type=EST; length=630bp
ACTGAGAAAGATAAGGATCAGCAGATTCTTCCTGAGAAGGAACATACTGC
AGCTCTTTCCCAGGTACGGGAGATCAATGCAGCTTTGGAACCTTTGTGGC
TGGAGCTGAGTACATGCATAAGCAAAATAGAGAGCTTTTCAGATTCTTCT
CCTGATTTGTTTACTACTGCAAAAACTTCAGCTGCCAAAGCCTTCAGTGC
CACATCACCCCTTCCTGCTGGTGCTCAGAACATCTTACCATATATAGAAT
CATTCTTTGTGATGTGTGAAAAGTTGCATCCTGCACAACCAGGTTCCAGT
CATGATTTTGGTGTAGTTGCAGTTTCTGAGGTCGAAGAAACTAGTACATC
TTCTGCCCAGCAGAAAACCTCAGGGCATGTTACAAAAGTTGATGAAAAAC
AGATTGCTTTCGTGAGGTTCTCAGAAAAGCACAGGAAGCTGCTAAATGCA
TTCATCCGTCAAAATCCTGGATTACTAGAGAAGTCTTTCTCACTCATGCT
GAAGGTTCCTCGCTTTGTTGATTTTGACAATAAGCGTGCACATTTCAGAT
CAAAAATAAAGCATCAACATGATCACCACCACAGTCCTTTGAGAATATCT
GTAAGAAGAGCTTACATTCTTGAAGATTCA
back to top