CX295876
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295876 vs. ExPASy Swiss-Prot
Match: UPL1_ARATH (E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3) HSP 1 Score: 160.999 bits (406), Expect = 4.603e-39 Identity = 89/190 (46.84%), Postives = 110/190 (57.89%), Query Frame = 1 Query: 64 VREINAALEPLWLELSTCISKIESFSDSSPDLXXXXXXXXXXXXXXXXPLPAGAQNILPYIESFFVMCEKLHPAQPGSSHDFGXXXXXXXXXXXXXXXQQKTSGHVTKVDEKQIAFVRFSEKHRKLLNAFIRQNPGLLEKSFSLMLKVPRFVDFDNKRAHFRSKIKHQHDHHHS-PLRISVRRAYILEDS 630 ++ +N ALEPLW ELS CIS E D + L G Q +LP IE+FFV+CEK+ P KTS K + + F +F+EKHR+LLN+FIRQNP LLEKS S+MLK PR +DFDNK+A+FRS+I+HQHD H S PLRISVRRAY+LEDS Sbjct: 3145 MQRLNVALEPLWHELSQCISMTELQLDHTAAASNINPGDHVLGISPTSSLSPGTQRLLPLIEAFFVLCEKIQT--PSMLQQDTNVTAGEVKESSAHGSSSKTSVDSQKKTDGSVTFSKFAEKHRRLLNSFIRQNPSLLEKSLSMMLKAPRLIDFDNKKAYFRSRIRHQHDQHISGPLRISVRRAYVLEDS 3332
BLAST of CX295876 vs. ExPASy Swiss-Prot
Match: UPL2_ARATH (E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=2) HSP 1 Score: 155.992 bits (393), Expect = 1.481e-37 Identity = 90/211 (42.65%), Postives = 116/211 (54.98%), Query Frame = 1 Query: 1 TEKDKDQQILPEKEHTAALSQVREINAALEPLWLELSTCISKIESFSDSSPDLXXXXXXXXXXXXXXXXPLPAGAQNILPYIESFFVMCEKLHPAQPGSSHDFGXXXXXXXXXXXXXXXQQKTSGHVTKVDEKQIAFVRFSEKHRKLLNAFIRQNPGLLEKSFSLMLKVPRFVDFDNKRAHFRSKIKHQHDHHHS-PLRISVRRAYILEDS 630 T+K+ DQ+ + ++ + ALEPLW EL CIS E D + L G Q++LP IE+FFV+CEK+ P KT K + + F +F EKHR+LLN+F+RQNP LLEKSFS+MLK PR +DFDNK+A+FRS+I+HQHD H S PLRISVRRAY+LEDS Sbjct: 3110 TDKETDQE---------EQNIMQGLKVALEPLWQELGQCISMTELQLDHTAATSNVNPGDHVLGISPTSSLSPGTQSLLPLIEAFFVLCEKIQT--PSMLQQDATVTAGEVKESSTHGSSSKTIVDSQKKIDGSVTFSKFVEKHRRLLNSFVRQNPSLLEKSFSMMLKAPRLIDFDNKKAYFRSRIRHQHDQHISGPLRISVRRAYVLEDS 3309
BLAST of CX295876 vs. ExPASy Swiss-Prot
Match: TOM1_NEUCR (E3 ubiquitin-protein ligase TOM1-like OS=Neurospora crassa GN=B11B22.010 PE=3 SV=3) HSP 1 Score: 70.0922 bits (170), Expect = 1.069e-11 Identity = 42/138 (30.43%), Postives = 70/138 (50.72%), Query Frame = 1 Query: 232 ILPYIESFFVMCEKLHPAQPGSSHDFGXXXXXXXXXXXXXXXQQKTSGHVTKVDEKQIA--FVRFSEKHRKLLNAFIRQNPGLLEKSFSLMLKVPRFVDFDNKRAHFRSKIKHQHD---HHHSPLRISVRRAYILEDS 630 +LP IES V+C+ + + + QK + E +IA F F+E+HR++LN +R NP L+ +FSL++K P+ ++FDNKR +F + ++ H PL++ VRR ++ DS Sbjct: 3560 LLPLIESLMVVCKNTTLSDASAVSNAN---------------SQKEMLLTSPPPEDRIAGLFFTFTEEHRRILNELVRHNPKLMSGTFSLLVKNPKVLEFDNKRNYFNRSVHSKYQQTRHSFPPLQLQVRREHVFHDS 3682 The following BLAST results are available for this feature:
BLAST of CX295876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 3
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX295876 ID=CX295876; Name=CX295876; organism=Citrus clementina; type=EST; length=630bpback to top |