CX295878

Overview
NameCX295878
Unique NameCX295878
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA1A_ORYSJ (Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2)

HSP 1 Score: 291.582 bits (745), Expect = 2.800e-78
Identity = 157/212 (74.06%), Postives = 174/212 (82.08%), Query Frame = 1
Query:   13 PGMLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVC 627
            P M+ GV+SDD+ LQLEATT FRKLL     PP E+VIQSGVV RFV+FLTRED PQLQ EAA ALTNIAS   ENT VVID GAVPIFVKLL S SDDVRE+AVWALGN+A  SP+ RDLVL+  AL+PLLAQLN+H K SMLRNAT TLS FC+GKP+P F+Q RPALPALA+L+HSND +VL  AC ALS LSDGTNDKIQAVIEA VC
Sbjct:   75 PAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 286          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA_SOLLC (Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2)

HSP 1 Score: 280.411 bits (716), Expect = 6.454e-75
Identity = 151/212 (71.23%), Postives = 169/212 (79.72%), Query Frame = 1
Query:   13 PGMLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVC 627
            P ++AGVWSDDS LQLE TT FRKLL     PP E+VIQSGVV RFVEFL R+D PQLQ EAA ALTNIAS   ENT VVID G+VPIF++LLSSPSDDVRE+AVWALGNIA  SP+ RDLVL   AL+ LLAQ N+ AK SMLRNAT TLS FC+GKP+P F+Q + ALP L +L+HSND +VL  AC ALS LSDGTNDKIQAVIEA VC
Sbjct:   76 PELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVVPRFVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQAVWALGNIAGDSPKYRDLVLGHGALVALLAQFNEQAKLSMLRNATWTLSNFCRGKPQPLFEQTKAALPTLGRLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 287          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA1_ARATH (Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=2 SV=2)

HSP 1 Score: 270.011 bits (689), Expect = 8.723e-72
Identity = 146/209 (69.86%), Postives = 168/209 (80.38%), Query Frame = 1
Query:   19 MLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADV 624
            M+AGVWSDD  LQLE+TT FRKLL     PP E+VI +GVV RFVEFL +ED P +Q EAA ALTNIAS   ++T VVID  AVPIFV+LL+SPSDDVRE+AVWALGN+A  SPR RDLVL   AL+PLL QLN+HAK SMLRNAT TLS FC+GKP+P FDQV+PALPAL +L+HS+D +VL  AC ALS LSDGTNDKIQ VI+A V
Sbjct:   77 MVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPRFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQVKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGV 285          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA1B_ORYSJ (Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2)

HSP 1 Score: 266.159 bits (679), Expect = 1.260e-70
Identity = 144/211 (68.25%), Postives = 166/211 (78.67%), Query Frame = 1
Query:   13 PGMLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADV 624
            P M+  V SDDS +QLEATT FRKLL     PP E+VI +GVV RF+ FL RED PQLQ EAA ALTNIAS   +NT VV++ GAVPIFVKLLSSPS+DVRE+AVWALGN+A  SP+ RDLVL+   L PLL QLN+HAK SMLRNAT TLS FC+GKP+P F+QV+PAL AL +L+HS D +VL  AC ALS LSDGTNDKIQAVIE+ V
Sbjct:   81 PAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINTGVVPRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDVREQAVWALGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPNFEQVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGV 291          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA2_ARATH (Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 1.882e-66
Identity = 136/211 (64.45%), Postives = 163/211 (77.25%), Query Frame = 1
Query:   13 PGMLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADV 624
            P M+AG+WS+DS  QLEAT   RKLL     PP  +V+QSGVV R V+FL+R+D P+LQ EAA ALTNIAS   ENTNV+I+ GAVPIF++LLSS S+DVRE+AVWALGN+A  SP+ RDLVLS  A+ PLL+Q N++ K SMLRNAT TLS FC+GKP P F+Q +PALP L +LV S D +VL  AC ALS LSD +NDKIQAVIEA V
Sbjct:   78 PAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVVPRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQAVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAFEQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGV 288          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMAB_DICDI (Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.012e-56
Identity = 125/216 (57.87%), Postives = 157/216 (72.69%), Query Frame = 1
Query:    7 EFPGMLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHA--KPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVC 627
            + P ++A + S++  L L++TT FRKLL     PP E+VI++G+V R V+FL  +D PQLQ EAA ALTNIAS   E T VVI+ GA+ +FV LLSSP DDVRE+AVWALGNIA  S   RDLVLS  AL PLL+ L   A  K SM+RNAT TLS FC+GKP+PPF+ VR +LP LA+L++  D +VL  AC ALS LSDG+N++IQ VI+A VC
Sbjct:   68 QLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYMQDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIAGDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRASLPVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVC 283          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA7_MOUSE (Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 6.083e-49
Identity = 116/212 (54.72%), Postives = 146/212 (68.87%), Query Frame = 1
Query:   19 MLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQS-GVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVC 627
            M+  ++SDDS LQL  T  FRKLL     PP ++VI + GVV RFVEFL R +N  LQ EAA ALTNIAS   + T +VI+ GAVPIF++LL+S  +DV+E+AVWALGNIA  S   RD VL+   L PLL  L K  + +M RNA   LS  C+GK P P F +V P LP L++L+ S+D+D+L  AC ALS LSDG N+KIQAVI++ VC
Sbjct:   85 MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSLCRDYVLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWALSYLSDGPNEKIQAVIDSGVC 296          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA7_BOVIN (Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.019e-48
Identity = 115/212 (54.25%), Postives = 145/212 (68.40%), Query Frame = 1
Query:   19 MLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQS-GVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVC 627
            M+  ++SDD  LQL  T  FRKLL     PP ++VI + GVV RFVEFL R +N  LQ EAA ALTNIAS   + T +VI+ GAVPIF++LL+S  +DV+E+AVWALGNIA  S   RD VL+   L PLL  L K  + +M RNA   LS  C+GK P P F +V P LP L++L+ S+D+D+L  AC ALS LSDG N+KIQAVI++ VC
Sbjct:   85 MVEMLFSDDPDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWALSYLSDGPNEKIQAVIDSGVC 296          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA7_PONAB (Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.726e-48
Identity = 115/212 (54.25%), Postives = 145/212 (68.40%), Query Frame = 1
Query:   19 MLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQSG-VVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVC 627
            M+  ++SDDS LQL  T  FRKLL     PP ++VI +  VV RFVEFL R +N  LQ EAA ALTNIAS   + T +VI+ GAVPIF++LL+S  +DV+E+AVWALGNIA  S   RD VL+   L PLL  L K  + +M RNA   LS  C+GK P P F +V P LP L++L+ S+D+D+L  AC ALS LSDG N+KIQAVI++ VC
Sbjct:   85 MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWALSYLSDGPNEKIQAVIDSGVC 296          
BLAST of CX295878 vs. ExPASy Swiss-Prot
Match: IMA7_HUMAN (Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.726e-48
Identity = 115/212 (54.25%), Postives = 145/212 (68.40%), Query Frame = 1
Query:   19 MLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQSG-VVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVC 627
            M+  ++SDDS LQL  T  FRKLL     PP ++VI +  VV RFVEFL R +N  LQ EAA ALTNIAS   + T +VI+ GAVPIF++LL+S  +DV+E+AVWALGNIA  S   RD VL+   L PLL  L K  + +M RNA   LS  C+GK P P F +V P LP L++L+ S+D+D+L  AC ALS LSDG N+KIQAVI++ VC
Sbjct:   85 MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWALSYLSDGPNEKIQAVIDSGVC 296          
The following BLAST results are available for this feature:
BLAST of CX295878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
IMA1A_ORYSJ2.800e-7874.06Importin subunit alpha-1a OS=Oryza sativa subsp. j... [more]
IMA_SOLLC6.454e-7571.23Importin subunit alpha OS=Solanum lycopersicum PE=... [more]
IMA1_ARATH8.723e-7269.86Importin subunit alpha-1 OS=Arabidopsis thaliana G... [more]
IMA1B_ORYSJ1.260e-7068.25Importin subunit alpha-1b OS=Oryza sativa subsp. j... [more]
IMA2_ARATH1.882e-6664.45Importin subunit alpha-2 OS=Arabidopsis thaliana G... [more]
IMAB_DICDI3.012e-5657.87Importin subunit alpha-B OS=Dictyostelium discoide... [more]
IMA7_MOUSE6.083e-4954.72Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 ... [more]
IMA7_BOVIN3.019e-4854.25Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE... [more]
IMA7_PONAB6.726e-4854.25Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 ... [more]
IMA7_HUMAN6.726e-4854.25Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 ... [more]

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Properties
Property NameValue
Genbank descriptionC05076H01SK DroRLeaf1 Citrus clementina cDNA clone C05076H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295878 ID=CX295878; Name=CX295878; organism=Citrus clementina; type=EST; length=706bp
GTTGGTGAGTTTCCTGGGATGCTTGCTGGGGTTTGGTCAGATGACAGTGG
CTTGCAGCTGGAAGCAACTACTTGGTTCCGAAAACTGCTCCTACCACCAA
GTGAGAAAGTCATACAATCTGGCGTTGTCGCGCGCTTTGTTGAGTTTCTT
ACTAGGGAAGACAATCCGCAGCTTCAGTTGGAAGCTGCTCGGGCTCTTAC
AAACATTGCTTCTGAGAATACTAATGTGGTGATCGACGGCGGTGCTGTTC
CAATATTTGTGAAGCTACTTTCTTCTCCAAGTGATGATGTCCGAGAGAAG
GCTGTTTGGGCACTGGGAAATATTGCTCGTAGCTCACCTAGAGACCGTGA
TCTTGTGCTCAGTGAAAAAGCTTTGATTCCGTTGCTGGCACAGTTAAATA
AGCATGCTAAGCCTTCAATGCTAAGAAATGCCACAAAGACATTGTCTCGT
TTTTGCCAGGGCAAGCCAGAGCCACCATTTGATCAGGTGAGGCCAGCTCT
TCCTGCGCTTGCACAACTTGTTCATTCAAATGACAACGATGTCTTGAGAT
ATGCCTGCGAGGCACTATCCTGTCTATCTGATGGTACGAATGACAAAATT
CAAGCTGTGATCGAGGCAGATGTCTGTCCACGACTTGTTAAGCTCCTTCT
TCATCCATTACCCTTCCCCTTCGGGCTCACTCCTCCCCTGTGGACTGTCA
GATATA
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