CX295882

Overview
NameCX295882
Unique NameCX295882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11354 contig Ccv1_Contig11354:139..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295882 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 1.086e-96
Identity = 162/238 (68.07%), Postives = 178/238 (74.79%), Query Frame = 2
Query:    5 QAGGAVCPGGLCCSKFGFCGNTPAYCTNGCQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKGFYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLRNPDAVANDPTISFKTAFWFWMTRQSPKPSCHDVITGQWKASAAD 718
            QAGG VCPGG CCSKFG+CGNT  YC +GCQSQCS                            R +F  +LKHRN+ +C GKGFYTYDAFIAAA +F  FGTTG+T TRKREIAAFLAQTSHETTGGW +APDGPYAWGYC+ +EQG+PG YC PS QWPCA G+KY+GRGPIQISYNYNYG AGKAI VDL+ NPD VA D  ISFKTAFWFWMT QSPKPSCH+VITG W  S AD
Sbjct:   26 QAGGRVCPGGACCSKFGWCGNTADYCGSGCQSQCSSTGDIGQLIT------------------RSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQAGKAIGVDLVNNPDLVATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGAD 245          
BLAST of CX295882 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 349.362 bits (895), Expect = 1.200e-95
Identity = 162/239 (67.78%), Postives = 179/239 (74.90%), Query Frame = 2
Query:    5 QAGGAVCPGGLCCSKFGFCGNTPAYCTNG-CQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKGFYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLRNPDAVANDPTISFKTAFWFWMTRQSPKPSCHDVITGQWKASAAD 718
            QAGGA CP GLCCSKFG+CGNT  YC  G CQSQC G                             +F+Q+LKHRND ACQGKGFY+Y+AFI AA SF  FGT+G+T  RKREIAAF AQTSHETTGGW TAPDGPYAWGYC+ +EQG+PGDYC PS QWPCAPG+KYFGRGPIQIS+NYNYGP G+AI VDLL NPD VA DP ISFK+A WFWMT QSPKPSCHDVI G+W+ SA D
Sbjct:   29 QAGGARCPSGLCCSKFGWCGNTNDYCGPGNCQSQCPGGPTPTPPTPPGGGDLGSIISS-------SMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGD 260          
BLAST of CX295882 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 349.362 bits (895), Expect = 1.200e-95
Identity = 160/238 (67.23%), Postives = 180/238 (75.63%), Query Frame = 2
Query:    5 QAGGAVCPGGLCCSKFGFCGNTPAYCTNGCQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKGFYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLRNPDAVANDPTISFKTAFWFWMTRQSPKPSCHDVITGQWKASAAD 718
            QAGGA CP  LCCS+FG+CG+TP YC +GCQSQCSG                           R LF+++L HRND ACQ KGFYTYDAF+AAA++F  FGTTG TDTRKRE+AAFLAQTSHETTGGW TAPDG +AWGYCFKQE+G   +YC PS QWPCAPGK Y+GRGPIQ+S+NYNYGPAG+AI VDLLRNPD VA DPT+SFKTA WFWMT Q+PKPS H VITGQW  S  D
Sbjct:   25 QAGGATCPNCLCCSRFGWCGSTP-YCGDGCQSQCSGCGGGSTPVTPTPSGGGGVSSIVS----RALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTD 257          
BLAST of CX295882 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 348.977 bits (894), Expect = 1.568e-95
Identity = 162/240 (67.50%), Postives = 179/240 (74.58%), Query Frame = 2
Query:    5 QAGGAVCPGGLCCSKFGFCGNTPAYCTNG-CQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKG-FYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLRNPDAVANDPTISFKTAFWFWMTRQSPKPSCHDVITGQWKASAAD 718
            QAGGA+C  GLCCSKFG+CGNT  YC  G CQSQC G                             +F+Q+L HRND ACQGK  FY+Y+AF+ AA SF  FGTTG+   RKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCF +EQG+PGDYC PS QWPCAPG+KYFGRGPIQIS+NYNYGP G+AI VDLL NPD VA DP ISFK+A WFWMT QSPKPSCHDVITG+W+ S AD
Sbjct:   28 QAGGALCASGLCCSKFGWCGNTNEYCGPGNCQSQCPGGPGPSGDLGGVIS--------------NSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGAD 253          
BLAST of CX295882 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 348.977 bits (894), Expect = 1.568e-95
Identity = 158/238 (66.39%), Postives = 179/238 (75.21%), Query Frame = 2
Query:    5 QAGGAVCPGGLCCSKFGFCGNTPAYCTNGCQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKGFYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLRNPDAVANDPTISFKTAFWFWMTRQSPKPSCHDVITGQWKASAAD 718
            QAGGA CP  LCCS+FG+CG+T  YC +GCQSQC+G                           R LF+++L HRND ACQ KGFYTYDAF+AAA +F  FGTTG+TDTRKRE+AAFLAQTSHETTGGW TAPDG +AWGYCFKQE+G   +YC PS QWPCAPGK Y+GRGPIQ+S+NYNYGPAG+AI VDLLRNPD VA DPT+SFKTA WFWMT Q+PKPS H VITGQW  S  D
Sbjct:   25 QAGGATCPNCLCCSRFGWCGSTSDYCGDGCQSQCAGCGGGGTPVTPTPTPSGGGGVSSIVS--RALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTD 260          
BLAST of CX295882 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 4.562e-95
Identity = 163/241 (67.63%), Postives = 179/241 (74.27%), Query Frame = 2
Query:    2 RQAGGAVCPGGLCCSKFGFCGNTPAYCTNG-CQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKG-FYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLRNPDAVANDPTISFKTAFWFWMTRQSPKPSCHDVITGQWKASAAD 718
            +QAGGA C  GLCCS FG+CGNT  YC  G CQSQC                               +F+Q+LKHRND ACQGK  FY+Y+AFI AA SFG FGTTG+T  RKREIAAF AQTSHETTGGWPTAPDGPYAWGYCF +EQG+PGDYC PS QWPCAPG+KYFGRGPIQIS+NYNYGP G+AI VDLL NPD VA DP ISFK+A WFWMT QSPKPSCHDVI G+W+ SAAD
Sbjct:   23 KQAGGARCAAGLCCSNFGWCGNTNDYCGPGKCQSQCPSGPSPKPPTPGPGPSGGDIGSVIS----NSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAAD 259          
BLAST of CX295882 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 7.781e-95
Identity = 161/239 (67.36%), Postives = 179/239 (74.90%), Query Frame = 2
Query:    5 QAGGAVCPGGLCCSKFGFCGNTPAYCTNG-CQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKGFYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLRNPDAVANDPTISFKTAFWFWMTRQSPKPSCHDVITGQWKASAAD 718
            QAGGA C  GLCCSKFG+CGNT  YC  G CQSQC G                             +F+Q+LKHRND ACQGKGFY+Y+AFI AA SF  FGT+G+T  RKREIAAF AQTSHETTGGW TAPDGPYAWGYC+ +EQG+PGDYC PS QWPCAPG+KYFGRGPIQIS+NYNYGP G+AI VDLL NPD VA DP ISFK+A WFWMT QSPKPSCHDVI G+W+ S+AD
Sbjct:   29 QAGGARCASGLCCSKFGWCGNTNDYCGPGNCQSQCPGGPTPPGGGDLGSIISS------------SMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSAD 255          
BLAST of CX295882 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 3.862e-94
Identity = 156/238 (65.55%), Postives = 179/238 (75.21%), Query Frame = 2
Query:    5 QAGGAVCPGGLCCSKFGFCGNTPAYCTNGCQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKGFYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLRNPDAVANDPTISFKTAFWFWMTRQSPKPSCHDVITGQWKASAAD 718
            QAGGA CP  LCCS++G+CG T  +C +GCQSQCSG                           RDLFE+LL HRND AC  +GFYTY+AF+AAA +F AFG TGNT+TRKRE+AAFL QTSHETTGGWPTAPDGP++WGYCFKQEQ  P DYCQPS +WPCAPG+KY+GRGPIQ+S+N+NYGPAG+AI VDLL NPD VA D T+SFKTA WFWMT Q  KPS HDVITG+W  S AD
Sbjct:   38 QAGGARCPNCLCCSRWGWCGTTSDFCGDGCQSQCSGCGPTPTPTPPSPSDGVGSIVP------RDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPAD 269          
BLAST of CX295882 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 5.044e-94
Identity = 161/240 (67.08%), Postives = 179/240 (74.58%), Query Frame = 2
Query:    5 QAGGAVCPGGLCCSKFGFCGNTPAYCTNG-CQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKG-FYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLRNPDAVANDPTISFKTAFWFWMTRQSPKPSCHDVITGQWKASAAD 718
            QAGGA+C  GLCCSKFG+CGNT  YC  G CQSQC G                             +F+Q+L HRND ACQGK  FY+Y+AFI+AA SF  FGTTG+   RKREIAAFLAQTSHETTGGWP+APDGPYAWGYCF +EQG+PGDYC PS QWPCAPG+KYFGRGPIQIS+NYNYGP G+AI VDLL NPD VA D  ISFK+A WFWMT QSPKPSCHDVITG+W+ S AD
Sbjct:   24 QAGGALCAPGLCCSKFGWCGNTNDYCGPGNCQSQCPGGPGPSGDLGGVIS--------------NSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGAD 249          
BLAST of CX295882 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 6.587e-94
Identity = 160/240 (66.67%), Postives = 178/240 (74.17%), Query Frame = 2
Query:    5 QAGGAVCPGGLCCSKFGFCGNTPAYCTNG-CQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKG-FYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLRNPDAVANDPTISFKTAFWFWMTRQSPKPSCHDVITGQWKASAAD 718
            QAGGA+C  GLCCSKFG+CG+T  YC  G CQSQC G                             +F+Q+L HRND ACQGKG FY+Y+AFI+AA SF  FGTTG+   RKREIAAF AQTSHETTGGWPTAPDGPYAWGYCF +EQG+PGDYC PS QWPCAPG+KYFGRGPIQIS+NYNYGP G+AI VDLL NPD VA D  ISFK+A WFWMT QSPKPSCHDVITG+W+ S  D
Sbjct:   24 QAGGALCASGLCCSKFGWCGDTNDYCGPGNCQSQCPGGPGPSGDLGGVIS--------------NSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVD 249          
The following BLAST results are available for this feature:
BLAST of CX295882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
CHIB_VITVI1.086e-9668.07Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI1_TOBAC1.200e-9567.78Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI1_HORVU1.200e-9567.2326 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIC_SOLLC1.568e-9567.50Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHIA_SECCE1.568e-9566.39Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI4_SOLTU4.562e-9567.63Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_TOBAC7.781e-9567.36Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI2_ORYSJ3.862e-9465.55Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI3_SOLTU5.044e-9467.08Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_SOLTU6.587e-9466.67Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionC05076H06SK DroRLeaf1 Citrus clementina cDNA clone C05076H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295882 ID=CX295882; Name=CX295882; organism=Citrus clementina; type=EST; length=735bp
GAGGCAGGCTGGAGGAGCTGTATGTCCAGGAGGACTGTGTTGCAGCAAAT
TTGGCTTCTGCGGCAACACTCCTGCTTATTGCACCAATGGCTGCCAAAGC
CAGTGCAGTGGGTCACCCTCACCCACGCCGACTAATCCGACTCCCGTACC
TGCTCCAAGCGGCGGCGGGAACAATATCGGTTCACTAATTAGCAGGGACC
TATTTGAACAGCTGTTGAAGCATCGTAATGATGCTGCTTGCCAAGGAAAA
GGTTTTTACACTTACGACGCTTTCATCGCTGCCGCCAATTCCTTTGGTGC
CTTCGGAACAACCGGTAACACCGATACTCGCAAAAGAGAAATCGCGGCCT
TTTTGGCTCAAACTTCACATGAAACTACAGGTGGCTGGCCTACTGCGCCC
GATGGTCCATATGCATGGGGATATTGCTTCAAGCAGGAGCAAGGAAACCC
TGGAGATTATTGTCAACCAAGTCAACAATGGCCATGTGCACCTGGGAAAA
AGTATTTTGGCCGAGGTCCCATCCAGATTTCATACAACTACAACTACGGT
CCAGCAGGAAAAGCCATAAACGTTGACTTGCTTCGCAACCCAGATGCTGT
GGCAAATGATCCTACTATTTCGTTCAAGACTGCTTTCTGGTTCTGGATGA
CCCGACAGTCACCAAAACCTTCATGCCACGATGTTATCACAGGCCAATGG
AAAGCATCAGCCGCCGATACTCAGCTGGTCGCCTT
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