CX295883

Overview
NameCX295883
Unique NameCX295883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length581
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX295883 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.117e-45
Identity = 89/142 (62.68%), Postives = 104/142 (73.24%), Query Frame = 1 
Query:    4 QTRKETEFALSALMEIPSQYKATIELNLLGRRKGNVPERVALPPPVYGATTSFHSPKPFHSTSFKPNAPSYQ------ESQPVXXXXXXXXXXNENQLCSICLTNVKDMAFGCGHQTCCECGQDLELCPFCRSTIQTRIKLY 411
            Q+ KETEFALSALMEIP QYKATIELNLLGRR G +PER  LPPP+ G ++S++SPKP    SFKP+ P +        S PV          ++NQLC ICL+N KDMAFGCGHQTCCECG DL++CP CR+ IQTRIKLY
Sbjct:  330 QSLKETEFALSALMEIPQQYKATIELNLLGRRNGYIPERFPLPPPMRGGSSSYNSPKPSRLPSFKPSVPPHPTEGYHVRSSPV---PPPTSSASDNQLCPICLSNPKDMAFGCGHQTCCECGPDLQMCPICRAPIQTRIKLY 468
[Close]
BLAST of CX295883 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.967e-40
Identity = 83/138 (60.14%), Postives = 101/138 (73.19%), Query Frame = 1 
Query:    1 DQTRKETEFALSALMEIPSQYKATIELNLLGRRKGNVPERVALPPPVYGATTSFHSPKPFHSTSFKPNAPSYQ-ESQPVXXXXXXXXXXNENQLCSICLTNVKDMAFGCGHQTCCECGQDLELCPFCRSTIQTRIKLY 411
            DQ+RKETEFALSALMEIP QYKATIELNLLG R GN+P+R+ LPPPV   ++   S  P    +F+P+ P Y  ES+ +          ++ QLC ICL+N K+MAFGCGHQTCCECG DL++CP CR+ IQTRIKLY
Sbjct:  363 DQSRKETEFALSALMEIPPQYKATIELNLLGVRNGNIPQRIPLPPPVQSGSSFSSSRIP----NFEPSVPPYPFESKQMSSA-------DDIQLCPICLSNPKNMAFGCGHQTCCECGPDLKVCPICRAPIQTRIKLY 489
The following BLAST results are available for this feature:
BLAST of CX295883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RGLG2_ARATH2.117e-4562.68E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH5.967e-4060.14E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC05076H07SK DroRLeaf1 Citrus clementina cDNA clone C05076H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295883 ID=CX295883; Name=CX295883; organism=Citrus clementina; type=EST; length=581bp
GATCAAACTCGAAAGGAGACAGAATTTGCCCTTTCTGCTTTAATGGAAAT
TCCTTCTCAGTATAAAGCAACAATAGAGCTTAACCTACTGGGTCGCCGGA
AGGGAAATGTTCCAGAGAGGGTTGCCCTCCCTCCACCTGTATATGGTGCA
ACCACATCTTTTCACAGCCCAAAACCTTTCCATTCTACCAGTTTTAAGCC
AAATGCACCTTCCTATCAAGAAAGTCAGCCTGTCAGCTCAGCTCCTCCTG
CTACAAGTTCAACGAATGAAAATCAGCTTTGCTCCATTTGCCTAACTAAT
GTGAAAGATATGGCCTTTGGTTGCGGACATCAGACATGTTGCGAATGTGG
ACAAGACCTTGAATTATGTCCCTTTTGTCGAAGCACAATCCAGACCCGAA
TTAAGCTCTACTAATCTGCATCATCAACAATGACCAAAATTCTTTGTCAT
TTGTTATGAAAATGATGTTAGATTTGCTGAATTCAGCTTGAGATGATCTT
GGATGCTAGGAAATGGAAGTGTTTAGGTGCTGTACATTATTGTAAACTTA
TTGGTCACATTATTTTTTGTTTCTTTTTGTG
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