CX295887

Overview
NameCX295887
Unique NameCX295887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5775 contig Ccv1_Contig5775:1..644. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295887 vs. ExPASy Swiss-Prot
Match: Y3720_ARATH (UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.590e-24
Identity = 62/156 (39.74%), Postives = 90/156 (57.69%), Query Frame = 2
Query:  158 IFKVPDVLRKLNEKAYEPKMLAIGPYHHGKEELSTFEVHKTRYLRELLHRTSKPLPD---YVTAMRAMEERAKNCYGGSLSLETDKFVLMMLLDGCFIVEVIRKFALTRLRGNDPIFELSWMLPSIARDMILLENQLPFFVLWELFTMTKIPNDQD 616
            IF+VP+    LN KAY+PK+++IGPYH+G++ L   + HK R L+  L    K   +    V A+  +E++ +  Y   L    D  + MM+LDGCFI+ V    +       DPIF + W+L SI  D++LLENQ+PFFVL  L+  +KI    D
Sbjct:   48 IFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQLFLDEAKKKDVEENVLVKAVVDLEDKIRKSYSEELKTGHD-LMFMMVLDGCFILMVFLIMSGNIELSEDPIFSIPWLLSSIQSDLLLLENQVPFFVLQTLYVGSKIGVSSD 202          
BLAST of CX295887 vs. ExPASy Swiss-Prot
Match: Y3264_ARATH (Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.000e-11
Identity = 44/170 (25.88%), Postives = 87/170 (51.18%), Query Frame = 2
Query:  155 NIFKVPDVLRKLNEKAYEPKMLAIGPYHHGKEELSTFEVHKTRYLRELLHR-TSKPLPDYVTAMRAMEERAKNCYGGSLSLETDKFVLMMLLDGCFIVEVIRKFALTRLR------GNDPIFELSWMLPSIARDMILLENQLPFFVLWELFTMTKIPNDQDSDEFLLMIL 643
            +IF VP  L   +  +Y P  ++IGPYH  K EL   E +K    R++ ++  S    D V  +++ME + + CY   +    +  + +M +D  F++E ++ ++  ++       G++           I RD++++ENQ+P FVL +     ++ + + +D+ LL +L
Sbjct:   44 SIFNVPKALMCSHPDSYTPHRVSIGPYHCLKPELHEMERYKLMIARKIRNQYNSFRFHDLVEKLQSMEIKIRACYHKYIGFNGETLLWIMAVDSSFLIEFLKIYSFRKVETLINRVGHN----------EILRDIMMIENQIPLFVLRKTLEF-QLESTESADDLLLSVL 202          
The following BLAST results are available for this feature:
BLAST of CX295887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y3720_ARATH4.590e-2439.74UPF0481 protein At3g47200 OS=Arabidopsis thaliana ... [more]
Y3264_ARATH2.000e-1125.88Putative UPF0481 protein At3g02645 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC05076H11SK DroRLeaf1 Citrus clementina cDNA clone C05076H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295887 ID=CX295887; Name=CX295887; organism=Citrus clementina; type=EST; length=666bp
GAGGCATTGCCTCGGTAAGATTGCGATCTCGTTAAGCAATCGGAACGGTA
GCCTTCAAACGAATCAAGGCATGGCAAGTCCATCAGCTGACACAGTACTT
CATCTTGTTGAGGAAAAGCTTAGTGGTCTAACTGCTACACCATCTGATCG
GTTCAACATTTTTAAGGTGCCTGATGTACTGCGTAAGTTAAATGAAAAGG
CTTATGAACCAAAAATGCTAGCAATTGGTCCTTATCATCACGGTAAAGAA
GAATTATCGACCTTTGAAGTGCACAAAACACGCTATCTCAGAGAACTTCT
ACACCGTACGAGCAAGCCTTTGCCAGACTATGTCACGGCCATGAGGGCAA
TGGAAGAAAGAGCTAAAAATTGTTATGGAGGGTCCCTAAGTTTAGAGACA
GATAAATTTGTGCTAATGATGCTTCTCGATGGTTGTTTTATCGTTGAGGT
TATTCGTAAGTTTGCATTGACACGTTTGAGAGGAAATGACCCAATTTTTG
AACTGAGTTGGATGTTACCTTCCATAGCACGAGATATGATTTTGCTTGAG
AATCAACTTCCATTTTTTGTTCTCTGGGAGTTGTTTACCATGACTAAGAT
CCCTAATGATCAAGATAGTGATGAATTTCTTCTCATGATCCTGCGTTTTT
TCAATGGCATATTACC
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