CX296267

Overview
NameCX296267
Unique NameCX296267
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296267 vs. ExPASy Swiss-Prot
Match: GOT1B_MOUSE (Vesicle transport protein GOT1B OS=Mus musculus GN=Golt1b PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.707e-13
Identity = 34/92 (36.96%), Postives = 54/92 (58.70%), Query Frame = 1
Query:  166 DRGLLALGNIXXXXXXXXXXXXQSTWKLFTNRANYKGSICFLLGLFFLFVRWPIVGIILEIYGFIALFSGFWPSVKVFLYQIPVVGWIIQYP 441
            D+ LLA+GN+            + T++ F  R   K +  FL G+F + + WP++G+I EIYGF  LF GF+P V  F+ ++PV+G ++  P
Sbjct:   31 DKALLAIGNVLFVAGLAFVIGLERTFRFFFQRHKVKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLNLP 122          
BLAST of CX296267 vs. ExPASy Swiss-Prot
Match: GOT1_DICDI (Protein transport protein got1 homolog OS=Dictyostelium discoideum GN=golt1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.271e-12
Identity = 37/95 (38.95%), Postives = 54/95 (56.84%), Query Frame = 1
Query:  166 DRGLLALGNIXXXXXXXXXXXXQSTWKLFTNRANYKGSICFLLGLFFLFV-RWPIVGIILEIYGFIALFSGFWPSVKVFLYQIPVVGWIIQYPLM 447
            DR LLALGN+            Q T K F  +   KG+I F  G+  L V RW  VG+++EI+GF+ LF   +P V   L ++P++G I+ +PL+
Sbjct:   29 DRNLLALGNLLLVSGIVLILGLQKTTKFFAQKKKIKGTILFFFGIVVLLVTRWTFVGMVIEIFGFVNLFGDAFPIVISILRKLPIIGNILNHPLV 123          
BLAST of CX296267 vs. ExPASy Swiss-Prot
Match: GOT1B_HUMAN (Vesicle transport protein GOT1B OS=Homo sapiens GN=GOLT1B PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.271e-12
Identity = 33/92 (35.87%), Postives = 54/92 (58.70%), Query Frame = 1
Query:  166 DRGLLALGNIXXXXXXXXXXXXQSTWKLFTNRANYKGSICFLLGLFFLFVRWPIVGIILEIYGFIALFSGFWPSVKVFLYQIPVVGWIIQYP 441
            D+ LLA+GN+            + T++ F  +   K +  FL G+F + + WP++G+I EIYGF  LF GF+P V  F+ ++PV+G ++  P
Sbjct:   31 DKALLAIGNVLFVAGLAFVIGLERTFRFFFQKHKMKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLNLP 122          
BLAST of CX296267 vs. ExPASy Swiss-Prot
Match: GOT1B_BOVIN (Vesicle transport protein GOT1B OS=Bos taurus GN=GOLT1B PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.271e-12
Identity = 33/92 (35.87%), Postives = 54/92 (58.70%), Query Frame = 1
Query:  166 DRGLLALGNIXXXXXXXXXXXXQSTWKLFTNRANYKGSICFLLGLFFLFVRWPIVGIILEIYGFIALFSGFWPSVKVFLYQIPVVGWIIQYP 441
            D+ LLA+GN+            + T++ F  +   K +  FL G+F + + WP++G+I EIYGF  LF GF+P V  F+ ++PV+G ++  P
Sbjct:   31 DKALLAIGNVLFVAGLAFVIGLERTFRFFFQKHKMKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLNLP 122          
BLAST of CX296267 vs. ExPASy Swiss-Prot
Match: GOT1_YEAST (Protein transport protein GOT1 OS=Saccharomyces cerevisiae GN=GOT1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.661e-12
Identity = 38/103 (36.89%), Postives = 57/103 (55.34%), Query Frame = 1
Query:  166 DRGLLALGNIXXXXXXXXXXXXQSTWKLFTNRANYKGSICFLLGLFFLFVRWPIVGIILEIYGFIALFSGFWPSVKVFLYQIPVVGWIIQYPLM--ILDRLKG 468
            DR LLALGNI            Q T+  FT     +GS+ FL+G F + ++W  +G I+E  G I LF  F+  +  FL  +P++G I+ +P +  I+D+L G
Sbjct:   30 DRALLALGNILFLIGVFLIIGSQKTYIFFTRPNKRRGSLFFLVGAFLILLKWTFLGFIIESLGIIGLFGDFFGVIVQFLRSMPIIGPILSHPAIAPIVDKLAG 132          
The following BLAST results are available for this feature:
BLAST of CX296267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GOT1B_MOUSE5.707e-1336.96Vesicle transport protein GOT1B OS=Mus musculus GN... [more]
GOT1_DICDI1.271e-1238.95Protein transport protein got1 homolog OS=Dictyost... [more]
GOT1B_HUMAN1.271e-1235.87Vesicle transport protein GOT1B OS=Homo sapiens GN... [more]
GOT1B_BOVIN1.271e-1235.87Vesicle transport protein GOT1B OS=Bos taurus GN=G... [more]
GOT1_YEAST1.661e-1236.89Protein transport protein GOT1 OS=Saccharomyces ce... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05138B03SK FerrChloL1 Citrus clementina cDNA clone C05138B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296267 ID=CX296267; Name=CX296267; organism=Citrus clementina; type=EST; length=734bp
ACGAGGCCTCGTGCCGAATTCGGCACGAGGCTTTCAACTGCAACTTCCGT
TGATTGCTCTAATGTCATCGACATGGCCTACGAAATAGACGAGCGAAAAA
AGATTGGATTTGGTCTCATTGGTTTTGGCATCTTTTTCACTTTTCTTGCT
ATCATTCTTTTCTTTGACAGAGGTTTGCTTGCTCTAGGGAATATACTTTG
GTTAACTGGGGTCACTCTTTTGCTTGGTTTACAATCCACTTGGAAGCTCT
TTACTAACAGAGCAAACTATAAGGGCTCCATTTGCTTTCTTCTTGGACTC
TTTTTCTTATTTGTTCGTTGGCCAATTGTGGGTATAATCTTGGAAATATA
TGGTTTCATTGCTCTCTTCAGTGGCTTTTGGCCATCTGTCAAGGTTTTCC
TCTATCAGATTCCAGTTGTTGGATGGATCATACAGTATCCCCTTATGATT
CTTGATCGCCTGAAAGGTGGCTAGAACAATACACCTGCTGAATGCCATAT
TTTACTGACAAAGTGTTCCCAGTGTATTTCCCTGTAAAACCCAAGGTGAT
TGTGAAAATAATCGGTTCTTTCCTTGCAGTTAAACAATTGCCCTTTGGGT
GCAAGGAAAATAACTTGGGCTTATAATCTACCATAACAGATGGAGTAGGG
TTATATCAGTTGACAATTATCATTGTTTTGGATGTGTCAATCCAAAGGTT
TAGTCCCATAGATCAACTTTTTCTTTTTAGCTAG
back to top