CX296273 | Citrus Genome Database

Overview


Name	CX296273
Unique Name	CX296273
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	298

Libraries


Library Name	Type
FerrChloL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig9336	contig	Ccv1_Contig9336:145..442.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.231e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 3

Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 82.0333 bits (201), Expect = 1.021e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3

Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.231e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 3

Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 82.0333 bits (201), Expect = 1.021e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3

Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.231e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 3

Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 82.0333 bits (201), Expect = 1.021e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3

Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.231e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 3

Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 82.0333 bits (201), Expect = 1.021e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3

Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.231e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 3

Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 82.0333 bits (201), Expect = 1.021e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3

Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.231e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 3

Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 82.0333 bits (201), Expect = 1.021e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3

Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.231e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 3

Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 82.0333 bits (201), Expect = 1.021e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3

Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.231e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 3

Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 82.0333 bits (201), Expect = 1.021e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3

Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.231e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 3

Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 82.0333 bits (201), Expect = 1.021e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3

Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CX296273 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.231e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 3

Query:  153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 296
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 82.0333 bits (201), Expect = 1.021e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3

Query:   27 GTRPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
            G  PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of CX296273 vs. ExPASy Swiss-Prot

BLAST of CX296273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81


Match Name	E-value	Identity	Description
UBIQ_WHEAT	5.231e-20	100.00	Ubiquitin OS=Triticum aestivum PE=3 SV=1	[more]
UBIQ_SOYBN	5.231e-20	100.00	Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1	[more]
UBIQ_SOLTU	5.231e-20	100.00	Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1	[more]
UBIQ_SOLLC	5.231e-20	100.00	Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=...	[more]
UBIQ_PETCR	5.231e-20	100.00	Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3...	[more]
UBIQ_PEA	5.231e-20	100.00	Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1	[more]
UBIQ_ORYSJ	5.231e-20	100.00	Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ...	[more]
UBIQ_NICSY	5.231e-20	100.00	Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE...	[more]
UBIQ_MAIZE	5.231e-20	100.00	Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1	[more]
UBIQ_LUPPO	5.231e-20	100.00	Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	C05138B12SK FerrChloL1 Citrus clementina cDNA clone C05138B12, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX296273 ID=CX296273; Name=CX296273; organism=Citrus clementina; type=EST; length=298bp
TTCGGCAGAGGCCTCGTGCCGAATTCGGCACGAGGCCGGACCAGCAGCGT
CTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGCACCTTGGCCGATTA
CAATATCCAAAAGGAATCGACGCTTCATCTGGTGCTTCGTCTCCGTGGAG
GCATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAA
GTTGAGAGCTCCGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAA
GGAAGGGATTCCGCCGGACCAGCAGAGGCTGATCTTCGCCGGAAAGCA