CX296275
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP337_ARATH (Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E53 PE=2 SV=1) HSP 1 Score: 220.32 bits (560), Expect = 5.241e-57 Identity = 105/170 (61.76%), Postives = 138/170 (81.18%), Query Frame = 2 Query: 68 TFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITV-QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 T S+ K SPTPLL +++ +T+L+ALDS+I DLE+S Q GI++ + E FASLLETCY L+A++HG+++H LIP LLR N GISSKL+RLYA+ G + AH+VFD+MS R + F WNSLISGYAELG+YEDA+ALYFQM E+GV+PD+FTFPRVLKAC G+G +++G Sbjct: 45 TSLSFTKPSPTPLLIEKQSIHRTQLEALDSVITDLETSAQKGISLTEPEIFASLLETCYSLRAIDHGVRVHHLIPPYLLRNNLGISSKLVRLYASCGYAEVAHEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIG 214
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP296_ARATH (Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 1.262e-18 Identity = 61/154 (39.61%), Postives = 85/154 (55.19%), Query Frame = 2 Query: 128 PKTKLQALDSII----QDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 P KL D ++ Q L+ S N E FA +LE C + +AV G +LH R+ T + ++ KL+ +Y G +D+A +VFD+M +RTAFA WN++I Y GE A+ALY+ M EGV +FP +LKACA L IR G Sbjct: 53 PSPKLACFDGVLTEAFQRLDVSENNS---PVEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFA--WNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSG 201
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR8_ARATH (Pentatricopeptide repeat-containing protein At1g03540 OS=Arabidopsis thaliana GN=PCMP-E4 PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.822e-17 Identity = 47/128 (36.72%), Postives = 76/128 (59.38%), Query Frame = 2 Query: 191 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 G+ TF ++L C L+ ++ G ++H + TN + N + S LL +Y G + EA QVF+ MS + + + W++L+ GY + GE+E AI ++ +MEE+ D + F VLKACAGL +R+G Sbjct: 260 GLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVS--WSALLGGYCQNGEHEKAIEIFREMEEK----DLYCFGTVLKACAGLAAVRLG 381 HSP 2 Score: 77.7962 bits (190), Expect = 4.201e-14 Identity = 50/167 (29.94%), Postives = 87/167 (52.10%), Query Frame = 2 Query: 77 SYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL-IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 S S+PT + KL L I+ L S+ + I + +ASLL+TC ++ + HGI+ H + + L ++ + + LL LY G + E +VFD + A + W S++SGY E+ A+ ++ +M G++ ++FT +KAC+ LG +R+G Sbjct: 21 SISSSAPTK---QSRILELCKLGQLTEAIRILNSTHSSEIPATPKLYASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDGRFVKDAIS--WTSMMSGYVTGKEHVKALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLG 182 HSP 3 Score: 69.707 bits (169), Expect = 1.144e-11 Identity = 38/120 (31.67%), Postives = 64/120 (53.33%), Query Frame = 2 Query: 215 FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 F ++L+ C L AV G ++H N + S L+ LY G ID A +V+ +MS R WN+++S A+ G E+A++ + M ++G++PD +F +L AC G++ G Sbjct: 365 FGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDSASRVYSKMSIRNMIT--WNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAILTACGHTGMVDEG 482
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP115_ARATH (Pentatricopeptide repeat-containing protein At1g71460, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A3 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 9.044e-17 Identity = 50/169 (29.59%), Postives = 91/169 (53.85%), Query Frame = 2 Query: 74 SSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGE--YEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 SS P S P + ++ + L+ + L+ Q GI V TF++LLE C + K++ HG ++H I N L N+ + +KL+ +Y G + +A +VFD+ ++ ++ WN+L+ G G+ Y+D ++ + +M E GV+ + ++ V K+ AG +R G Sbjct: 67 SSLPLHSKNPYIIHRDIQIFARQNNLEVALTILDYLEQRGIPVNATTFSALLEACVRRKSLLHGKQVHVHIRINGLESNEFLRTKLVHMYTACGSVKDAQKVFDESTSSNVYS--WNALLRGTVISGKKRYQDVLSTFTEMRELGVDLNVYSLSNVFKSFAGASALRQG 233
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP315_ARATH (Pentatricopeptide repeat-containing protein At4g16470 OS=Arabidopsis thaliana GN=PCMP-E12 PE=2 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 7.656e-16 Identity = 46/130 (35.38%), Postives = 67/130 (51.54%), Query Frame = 2 Query: 185 QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 QN I TFAS+ C L +EHG + H ++ ++ N + S L+ +Y + H+VFDQ+S R W SLISGY G+ + + + +M+EEG P+ TF VL AC GL+ G Sbjct: 202 QNRIVPDQYTFASVFRACSALDRLEHGKRAHAVMIKRCIKSNIIVDSALVDMYFKCSSFSDGHRVFDQLSTRNVIT--WTSLISGYGYHGKVSEVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGLVDKG 329 HSP 2 Score: 80.1073 bits (196), Expect = 8.465e-15 Identity = 43/129 (33.33%), Postives = 70/129 (54.26%), Query Frame = 2 Query: 188 NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 +G+ V+ ET+A LL+ C Q K G ++H + N+ + KLL LYA G + A +F + R PWN++ISGY + G ++ + +Y+ M + + PDQ+TF V +AC+ L + G Sbjct: 102 SGLQVEPETYAVLLQECKQRKEYTKGKRIHAQMFVVGFALNEYLKVKLLILYALSGDLQTAGILFRSLKIRDLI--PWNAMISGYVQKGLEQEGLFIYYDMRQNRIVPDQYTFASVFRACSALDRLEHG 228
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP151_ARATH (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.000e-15 Identity = 44/130 (33.85%), Postives = 74/130 (56.92%), Query Frame = 2 Query: 185 QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 + G + +FAS+L C L + G+++H LI + + I S L+ +Y+ G +++A +VFD+M +R + WNSLI+ + + G +A+ ++ M E VEPD+ T V+ ACA L I+VG Sbjct: 145 KEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVS--WNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVG 272
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 1.306e-15 Identity = 45/134 (33.58%), Postives = 75/134 (55.97%), Query Frame = 2 Query: 173 ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 E V + T T+ L++ + V G +H ++ + + + LL LYA G + A++VFD+M + A WNS+I+G+AE G+ E+A+ALY +M +G++PD FT +L ACA +G + +G Sbjct: 110 EMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVA--WNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLG 241 HSP 2 Score: 70.0922 bits (170), Expect = 8.760e-12 Identity = 46/129 (35.66%), Postives = 72/129 (55.81%), Query Frame = 2 Query: 191 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE-EGVEPDQFTFPRVLKACAGLGLIRVG 574 GI T SLL C ++ A+ G ++H + L +N S+ LL LYA G ++EA +FD+M ++ + + W SLI G A G ++AI L+ ME EG+ P + TF +L AC+ G+++ G Sbjct: 217 GIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVS--WTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEG 343
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 2.909e-15 Identity = 47/160 (29.38%), Postives = 82/160 (51.25%), Query Frame = 2 Query: 95 PTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 P L N +KL+ + + + ++ TF S++++C L A+ G +H + + + + L+ Y+ G ++ A QVFD+M ++ A WNSL+SG+ + G ++AI +++QM E G EPD TF +L ACA G + +G Sbjct: 70 PDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVA--WNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLG 227 HSP 2 Score: 78.5666 bits (192), Expect = 2.463e-14 Identity = 49/142 (34.51%), Postives = 73/142 (51.41%), Query Frame = 2 Query: 152 DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE-GVEPDQFTFPRVLKACAGLGLIRVG 574 D IQ ++G + TF SLL C Q AV G +H+ I + L N + + L+ LY+ G + +A +VFD+M A W ++IS Y G + A+ L+ +ME++ G P+ TF VL ACA GL+ G Sbjct: 190 DEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAA--WTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEG 329
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR62_ARATH (Pentatricopeptide repeat-containing protein At1g28690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E34 PE=2 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 4.963e-15 Identity = 49/137 (35.77%), Postives = 77/137 (56.20%), Query Frame = 2 Query: 167 DLESSVQN-GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 D+ S+Q G TFAS++ C L + E G ++H I + + + + S LL +YA G I++A +VFDQM + F+ W S+I GY + G E+A+ L+ +M+E +EP+ TF L AC+ GL+ G Sbjct: 259 DMYISMQRAGFHPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQEKNVFS--WTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLVDKG 393
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR13_ARATH (Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 8.465e-15 Identity = 41/129 (31.78%), Postives = 69/129 (53.49%), Query Frame = 2 Query: 188 NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 +G+ + L C L A+ G+ +HR + + + N +S+ L+ LY G ++ A QVF M RT + WNS+I G+A G +++ + +M+E+G +PD TF L AC+ +GL+ G Sbjct: 200 SGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVS--WNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEG 326 The following BLAST results are available for this feature:
BLAST of CX296275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 116
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296275 ID=CX296275; Name=CX296275; organism=Citrus clementina; type=EST; length=576bpback to top |