CX296285

Overview
NameCX296285
Unique NameCX296285
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig680 contig Ccv1_Contig680:1..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296285 vs. ExPASy Swiss-Prot
Match: NDUAD_PANTR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pan troglodytes GN=NDUFA13 PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.080e-24
Identity = 55/119 (46.22%), Postives = 76/119 (63.87%), Query Frame = 3
Query:  135 VLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 491
            V QD PPPGG+ P+ Y R +P +G S             YG + + K N+ RR L+ E + AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+PP  GEL
Sbjct:    6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124          
BLAST of CX296285 vs. ExPASy Swiss-Prot
Match: NDUAD_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Homo sapiens GN=NDUFA13 PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.080e-24
Identity = 55/119 (46.22%), Postives = 76/119 (63.87%), Query Frame = 3
Query:  135 VLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 491
            V QD PPPGG+ P+ Y R +P +G S             YG + + K N+ RR L+ E + AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+PP  GEL
Sbjct:    6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124          
BLAST of CX296285 vs. ExPASy Swiss-Prot
Match: NDUAD_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Gorilla gorilla gorilla GN=NDUFA13 PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.080e-24
Identity = 55/119 (46.22%), Postives = 76/119 (63.87%), Query Frame = 3
Query:  135 VLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 491
            V QD PPPGG+ P+ Y R +P +G S             YG + + K N+ RR L+ E + AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+PP  GEL
Sbjct:    6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124          
BLAST of CX296285 vs. ExPASy Swiss-Prot
Match: NDUAD_MACFA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Macaca fascicularis GN=NDUFA13 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.547e-24
Identity = 55/126 (43.65%), Postives = 79/126 (62.70%), Query Frame = 3
Query:  114 ASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 491
            AS++   V QD PPPGG+ P+ Y R +P +G S             YG + + K N+ RR L+ E + AR A++P+ QAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+PP  GEL
Sbjct:   18 ASMEMPKVKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLVYGHWSIMKWNRERRRLQIEDFEARIALMPLFQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 143          
BLAST of CX296285 vs. ExPASy Swiss-Prot
Match: NDUAD_PONPY (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pongo pygmaeus GN=NDUFA13 PE=2 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 3.003e-23
Identity = 54/119 (45.38%), Postives = 75/119 (63.03%), Query Frame = 3
Query:  135 VLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 491
            V QD PPPGG+ P+ Y R +P +G S             YG + + K N+ RR L+ E + AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+ P  GEL
Sbjct:    6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLALGIGTLIYGHWSMMKWNRERRRLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVAPLIGEL 124          
BLAST of CX296285 vs. ExPASy Swiss-Prot
Match: NDUAD_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Bos taurus GN=NDUFA13 PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 3.003e-23
Identity = 53/119 (44.54%), Postives = 76/119 (63.87%), Query Frame = 3
Query:  135 VLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 491
            V QD PP GG+ P+ Y R +P +G S             +G + + K N+ RR L+ E + AR A++P+LQAE+D R ++  ++ LE EA VMKDVPGWKVGE+V+++ RW+ P  GEL
Sbjct:    6 VKQDMPPVGGYGPIDYKRNLPRRGLSGYSMFAVGIGALLFGYWSMMKWNRERRRLQIEDFEARIALMPLLQAEKDRRVLQMLRENLEEEATVMKDVPGWKVGESVFHTTRWVTPMMGEL 124          
BLAST of CX296285 vs. ExPASy Swiss-Prot
Match: NDUAD_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Mus musculus GN=Ndufa13 PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 5.663e-22
Identity = 50/119 (42.02%), Postives = 75/119 (63.03%), Query Frame = 3
Query:  135 VLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 491
            V QD PPPGG+ P+ Y R +P +G S             +G +++ + N+ RR L  E   AR A++P+ QAE+D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+PP  GE+
Sbjct:    6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMFAVGIGALIFGYWRMMRWNQERRRLLIEDLEARIALMPLFQAEKDRRTLQILRENLEEEAIIMKDVPNWKVGESVFHTTRWVPPLIGEM 124          
The following BLAST results are available for this feature:
BLAST of CX296285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NDUAD_PANTR2.080e-2446.22NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_HUMAN2.080e-2446.22NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_GORGO2.080e-2446.22NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_MACFA3.547e-2443.65NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_PONPY3.003e-2345.38NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_BOVIN3.003e-2344.54NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_MOUSE5.663e-2242.02NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05138D02SK FerrChloL1 Citrus clementina cDNA clone C05138D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296285 ID=CX296285; Name=CX296285; organism=Citrus clementina; type=EST; length=669bp
GATTCGGCCGAGGCAGAACCTACAAAAAGGGGCAAAAGAAGAAGAAAGGA
ATTGGAAGCATCTGAAAATCAGTGAAGATGACGGAGGCAATGATTAGAAA
GAAGCCAGGAATGGCCAGCGTGAAGGACATGCCGGTCCTACAAGACGGGC
CCCCGCCGGGCGGGTTCGCCCCGGTCCGATACGCCCGTCGGATCCCCACC
AAGGGCCCCAGCGCCATGGCCCTCTTTCTTGCAGCCTTTGGTGCTTTCTC
TTATGGCATGTATCAGGTTGGCAAAGGCAACAAGATCCGCAGGGCTCTTA
AAGAAGAAAAGTATGCCGCACGCAGGGCAATATTGCCTATGCTCCAAGCT
GAAGAAGATGAAAGATTTGTCAAAGAGTGGAAGAAGTATCTCGAGTATGA
AGCTGAAGTAATGAAGGATGTGCCTGGCTGGAAAGTCGGTGAAAATGTCT
ACAACTCTGGGAGATGGATGCCTCCAGCATCTGGTGAACTTCGTCCTGAA
GTCTGGTGATGGCATGCGCTTTCAACTGTTGGCCTGATATCGATGTTCAT
GAAAATTTCTGGTATTTCTTGGTGTACTTTCCTTTTATGAAATAAAATTG
TATTGGAAAACTACTTTACATGTATTCAAAATGCAGTAGTTTTTTGTTTA
AAAAAAGGGGGGGCCCGGT
back to top