CX296287

Overview
NameCX296287
Unique NameCX296287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length484
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig794 contig Ccv1_Contig794:210..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK_MEDTR (S-adenosylmethionine synthetase OS=Medicago truncatula GN=METK PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.648e-22
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = -2
Query:  334 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 483
            FRPGMI INLDLKRGGNSRFLKTAAYGHFGR+DPDFTWEVVKPLK+EKPQ
Sbjct:  344 FRPGMITINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 393          
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK1_DAUCA (S-adenosylmethionine synthetase 1 OS=Daucus carota GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.672e-22
Identity = 46/50 (92.00%), Postives = 49/50 (98.00%), Query Frame = -2
Query:  334 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 483
            FRPGMI+INLDLKRGGN RFLKTAAYGHFGR+DPDFTWEVVKPLK+EKPQ
Sbjct:  391 FRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 440          
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK2_CATRO (S-adenosylmethionine synthetase 2 OS=Catharanthus roseus GN=SAMS2 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.796e-22
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = -2
Query:  340 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 483
            FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLK+EK
Sbjct:  343 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKFEK 390          
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK1_SOLTU (S-adenosylmethionine synthetase 1 OS=Solanum tuberosum GN=METK1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.796e-22
Identity = 45/51 (88.24%), Postives = 50/51 (98.04%), Query Frame = -2
Query:  331 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQE 483
            FRPGM++INLDLKRGGN RFLKTAAYGHFGR+DPDFTWEVVKPLK+EKPQ+
Sbjct:  343 FRPGMMSINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQD 393          
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK2_ELAUM (S-adenosylmethionine synthetase 2 OS=Elaeagnus umbellata GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.263e-22
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = -2
Query:  334 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 483
            FRPGMI INLDLKRGGN RFLKTAAYGHFGR+DPDFTWE+VKPLK+EKPQ
Sbjct:  343 FRPGMITINLDLKRGGNDRFLKTAAYGHFGRDDPDFTWEIVKPLKWEKPQ 392          
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK1_SOLLC (S-adenosylmethionine synthetase 1 OS=Solanum lycopersicum GN=SAM1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.263e-22
Identity = 45/51 (88.24%), Postives = 50/51 (98.04%), Query Frame = -2
Query:  331 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQE 483
            FRPGM++INLDLKRGGN RFLKTAAYGHFGR+DPDFTWEVVKPLK+EKPQ+
Sbjct:  343 FRPGMMSINLDLKRGGNRRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQD 393          
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK4_VITVI (S-adenosylmethionine synthetase 4 OS=Vitis vinifera GN=METK4 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.068e-21
Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = -2
Query:  331 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQE 483
            FRPGMIAINLDLKRGGN RFLKTAAYGHFGR+DPDFTWEVVKPLK EK QE
Sbjct:  343 FRPGMIAINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKAEKAQE 393          
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK2_POPTR (S-adenosylmethionine synthetase 2 OS=Populus trichocarpa GN=METK2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.068e-21
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = -2
Query:  331 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQE 483
            FRPGMIAI+LDLKRGGN RFLKTAAYGHFGR+DPDFTWEVVKPLK EKPQ+
Sbjct:  343 FRPGMIAISLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKSEKPQQ 393          
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK2_DAUCA (S-adenosylmethionine synthetase 2 OS=Daucus carota GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.068e-21
Identity = 46/50 (92.00%), Postives = 49/50 (98.00%), Query Frame = -2
Query:  334 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 483
            FRPGMIAINLDLKRGGN+RFLKTAAYGHFGR+D DFTWEVVKPLK+EKPQ
Sbjct:  343 FRPGMIAINLDLKRGGNNRFLKTAAYGHFGRDDADFTWEVVKPLKWEKPQ 392          
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK_PHALU (S-adenosylmethionine synthetase OS=Phaseolus lunatus GN=SAMS PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.395e-21
Identity = 46/48 (95.83%), Postives = 48/48 (100.00%), Query Frame = -2
Query:  340 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 483
            FRPGMI+INLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLK+EK
Sbjct:  344 FRPGMISINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKWEK 391          
The following BLAST results are available for this feature:
BLAST of CX296287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
METK_MEDTR1.648e-2294.00S-adenosylmethionine synthetase OS=Medicago trunca... [more]
METK1_DAUCA3.672e-2292.00S-adenosylmethionine synthetase 1 OS=Daucus carota... [more]
METK2_CATRO4.796e-2297.92S-adenosylmethionine synthetase 2 OS=Catharanthus ... [more]
METK1_SOLTU4.796e-2288.24S-adenosylmethionine synthetase 1 OS=Solanum tuber... [more]
METK2_ELAUM6.263e-2290.00S-adenosylmethionine synthetase 2 OS=Elaeagnus umb... [more]
METK1_SOLLC6.263e-2288.24S-adenosylmethionine synthetase 1 OS=Solanum lycop... [more]
METK4_VITVI1.068e-2192.16S-adenosylmethionine synthetase 4 OS=Vitis vinifer... [more]
METK2_POPTR1.068e-2190.20S-adenosylmethionine synthetase 2 OS=Populus trich... [more]
METK2_DAUCA1.068e-2192.00S-adenosylmethionine synthetase 2 OS=Daucus carota... [more]
METK_PHALU1.395e-2195.83S-adenosylmethionine synthetase OS=Phaseolus lunat... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05138D05SK FerrChloL1 Citrus clementina cDNA clone C05138D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296287 ID=CX296287; Name=CX296287; organism=Citrus clementina; type=EST; length=484bp
GAGGGATGAATCTCATAATTTGATTATGAAGAAAAAATGCATTAATAGTA
CATTAACAAATAACAATGTTTCTCCACAAACGAGCTCTTCTTCCATCTCT
ATTTCTCTTCCTAGCATATCTCATACAGGCAACTTCTCTGTAATTCTTTC
ATCGACTATGACTCAATTAGACCACATATATCTTTCTATTATGGCAAAGA
TAATACAAATTTATTTATAAAAAAAAAGGCCAAGACCAAGAGAGAAAAAA
GACAGAATCTGACAGGCAGACGAAAGAACAAGTAAATTATTGAGTTCAAA
CAAAGAATGAAACTGCATACTTAAATTCTACTCTTGGGGTTTCTCATACT
TGAGGGGCTTCACCACCTCCCATGTGAAGTCAGGATCCTCCCTTCCAAAA
TGCCCATATGCAGCAGTCTTCAAAAACCTGCTATTTCCTCCCCTCTTGAG
ATCCAAGTTAATGGCAATCATTCCAGGCCTGAAA
back to top