CX296299

Overview
NameCX296299
Unique NameCX296299
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig683 contig Ccv1_Contig683:1..579. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP2_ARATH (Glycine dehydrogenase [decarboxylating] 2, mitochondrial OS=Arabidopsis thaliana GN=At4g33010 PE=1 SV=2)

HSP 1 Score: 347.436 bits (890), Expect = 2.526e-95
Identity = 165/185 (89.19%), Postives = 173/185 (93.51%), Query Frame = 3 
Query:   24 HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            HPV+ TGGIP PEK+ PLG I+AAPWGSALILPISYTYIAMMGS GLT+ASKIAILNANYMAKRLEKHYP+LFRGVNGTVAHEFI+DLRG KNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESK ELDR+CDALISIREEIAQIE G AD+ NNVLKGAPHPPSLLM DTW KPY
Sbjct:  803 HPVIPTGGIPQPEKTAPLGAISAAPWGSALILPISYTYIAMMGSGGLTDASKIAILNANYMAKRLEKHYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEIAQIEKGNADVQNNVLKGAPHPPSLLMADTWKKPY 987

HSP 2 Score: 21.557 bits (44), Expect = 2.526e-95
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1 
Query:    1 HLAPFLPS 24
            HLAPFLPS
Sbjct:  795 HLAPFLPS 802
[Close]
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_SOLTU (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 8.374e-95
Identity = 163/185 (88.11%), Postives = 175/185 (94.59%), Query Frame = 3 
Query:   24 HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            HPVV TGGIP+P+KS+PLG I+AAPWGSALILPISYTYIAMMGSKGLT+ASKIAIL+ANYMAKRLEKHYP+LFRGVNGT AHEFI+DLRG KNTAGIEPEDVAKRL+DYGFHGPTMSWPVPGTLMIEPTESESK ELDR+CDALISIREEIAQIE G  DI+NNVLKGAPHPPS+LM D WTKPY
Sbjct:  800 HPVVPTGGIPSPDKSEPLGAISAAPWGSALILPISYTYIAMMGSKGLTDASKIAILSANYMAKRLEKHYPVLFRGVNGTCAHEFIIDLRGFKNTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEIAQIEKGNVDINNNVLKGAPHPPSMLMADAWTKPY 984
[Close]
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_PEA (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Pisum sativum GN=GDCSP PE=1 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 2.764e-94
Identity = 162/185 (87.57%), Postives = 174/185 (94.05%), Query Frame = 3 
Query:   24 HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            HPVV TGGIPAPE  QPLG+I+AAPWGSALILPISYTYIAMMGS+GLT+ASKIAILNANYMAKRLE +YP+LFRGVNGTVAHEFI+DLRG KNTAGIEPEDVAKRLMDYGFHGPTMSWPV GTLMIEPTESESK ELDR+CDALISIR+EIA++E G AD+HNNVLKGAPHPPSLLM D WTKPY
Sbjct:  821 HPVVPTGGIPAPENPQPLGSISAAPWGSALILPISYTYIAMMGSQGLTDASKIAILNANYMAKRLESYYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVAGTLMIEPTESESKAELDRFCDALISIRKEIAEVEKGNADVHNNVLKGAPHPPSLLMADAWTKPY 1005

HSP 2 Score: 21.557 bits (44), Expect = 2.764e-94
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1 
Query:    1 HLAPFLPS 24
            HLAPFLPS
Sbjct:  813 HLAPFLPS 820
[Close]
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP1_ARATH (Glycine dehydrogenase [decarboxylating] 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSP PE=1 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 4.704e-94
Identity = 163/185 (88.11%), Postives = 173/185 (93.51%), Query Frame = 3 
Query:   24 HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            HPV+ TGGIP PE++ PLGTI+AAPWGSALILPISYTYIAMMGS GLT+ASKIAILNANYMAKRLE HYP+LFRGVNGTVAHEFI+DLRG KNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESK ELDR+CDALISIREEI+QIE G AD +NNVLKGAPHPPSLLM DTW KPY
Sbjct:  809 HPVIPTGGIPEPEQTSPLGTISAAPWGSALILPISYTYIAMMGSGGLTDASKIAILNANYMAKRLESHYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEISQIEKGNADPNNNVLKGAPHPPSLLMADTWKKPY 993

HSP 2 Score: 21.557 bits (44), Expect = 4.704e-94
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1 
Query:    1 HLAPFLPS 24
            HLAPFLPS
Sbjct:  801 HLAPFLPS 808
[Close]
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSPA_FLAPR (Glycine dehydrogenase [decarboxylating] A, mitochondrial OS=Flaveria pringlei GN=GDCSPA PE=2 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 9.259e-94
Identity = 163/185 (88.11%), Postives = 174/185 (94.05%), Query Frame = 3 
Query:   24 HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            HPVV+TGGIPAPE+SQPLGTIAAAPWGSALILPISYTYIAMMGS+G+T ASKIAILNANYMAKRLE HYPILFRGVNGTVAHEFIVDLR LK TAGIEPEDVAKRL+DYGFHGPTMSWPVPGTLMIEPTESESK ELDR+CDALISIR+EIA+IE G  D++NNV+KGAPHPP LLM D WTKPY
Sbjct:  802 HPVVATGGIPAPEQSQPLGTIAAAPWGSALILPISYTYIAMMGSQGITNASKIAILNANYMAKRLENHYPILFRGVNGTVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRQEIAEIEKGNVDLNNNVIKGAPHPPQLLMADKWTKPY 986
[Close]
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_FLAAN (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria anomala GN=GDCSP PE=3 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 2.694e-93
Identity = 163/185 (88.11%), Postives = 172/185 (92.97%), Query Frame = 3 
Query:   24 HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            HPVV TGGIPAPE+SQPLGTIAAAPWGSALILPISYTYIAMMGS+G+T ASKIAILNANYMAKRLE HYPILFRGVNGTVAHEFIVDLR LK TAGIEPEDVAKRL+DYGFHGPTMSWPVPGTLMIEPTESESK ELDR+CDALISIR+EIA+IE G  D +NNV+KGAPHPP LLM D WTKPY
Sbjct:  799 HPVVPTGGIPAPEESQPLGTIAAAPWGSALILPISYTYIAMMGSQGITNASKIAILNANYMAKRLENHYPILFRGVNGTVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRQEIAEIEKGNVDFNNNVIKGAPHPPQLLMADKWTKPY 983
[Close]
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSPB_FLAPR (Glycine dehydrogenase [decarboxylating] B, mitochondrial OS=Flaveria pringlei GN=GDCSPB PE=3 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 2.694e-93
Identity = 163/185 (88.11%), Postives = 172/185 (92.97%), Query Frame = 3 
Query:   24 HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            HPVV TGGIPAPE+SQPLGTIAAAPWGSALILPISYTYIAMMGS+G+T ASKIAILNANYMAKRLE HYPILFRGVNGTVAHEFIVDLR LK TAGIEPEDVAKRL+DYGFHGPTMSWPVPGTLMIEPTESESK ELDR+CDALISIR+EIA+IE G  D +NNV+KGAPHPP LLM D WTKPY
Sbjct:  799 HPVVPTGGIPAPEQSQPLGTIAAAPWGSALILPISYTYIAMMGSQGITNASKIAILNANYMAKRLENHYPILFRGVNGTVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRQEIAEIEKGNVDFNNNVIKGAPHPPQLLMADKWTKPY 983
[Close]
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_FLATR (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria trinervia GN=GDCSPA PE=3 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 3.518e-93
Identity = 163/185 (88.11%), Postives = 172/185 (92.97%), Query Frame = 3 
Query:   24 HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            HPVV TGGIPAPE+SQPLGTIAAAPWGSALILPISYTYIAMMGS+G+T ASKIAILNANYMAKRLE HYPILFRGVNGTVAHEFIVDLR LK TAGIEPEDVAKRL+DYGFHGPTMSWPVPGTLMIEPTESESK ELDR+CDALISIR+EIA+IE G  D +NNV+KGAPHPP LLM D WTKPY
Sbjct:  799 HPVVPTGGIPAPEQSQPLGTIAAAPWGSALILPISYTYIAMMGSQGITNASKIAILNANYMAKRLENHYPILFRGVNGTVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRQEIAEIEKGTVDFNNNVIKGAPHPPQLLMADKWTKPY 983
[Close]
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_ANAVT (Glycine dehydrogenase [decarboxylating] OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gcvP PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.012e-64
Identity = 118/185 (63.78%), Postives = 146/185 (78.92%), Query Frame = 3 
Query:   24 HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            HPV+ +G  P     Q +G +AAAPWGSA IL IS+ YIAMMG+ GLT+A+K+AILNANY+AKRLE +YP+L++G NG VAHE I+DLR LK +A IE +D+AKRL+DYGFH PT+SWPV GT+M+EPTESES+ ELDR+CDALI+IR+EIA IE GK D HNN+LK APH    L+   W  PY
Sbjct:  751 HPVLGSGKNP-----QNIGAVAAAPWGSASILVISWMYIAMMGADGLTQATKVAILNANYIAKRLETYYPVLYKGQNGLVAHECILDLRALKKSANIEIDDIAKRLIDYGFHAPTVSWPVTGTIMVEPTESESQAELDRFCDALIAIRQEIAAIEAGKMDTHNNLLKNAPHTIESLIVGEWLHPY 930
[Close]
BLAST of CX296299 vs. ExPASy Swiss-Prot
Match: GCSP_NOSP7 (Glycine dehydrogenase [decarboxylating] OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=gcvP PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 9.985e-64
Identity = 118/185 (63.78%), Postives = 146/185 (78.92%), Query Frame = 3 
Query:   24 HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 578
            HPVV+   I    +   +G +AAAPWGSA IL IS+ YIAMMG+ GLT+A+K+AILNANY+AK+LE +YP+L++G NG VAHE I+DLR LK +A IE +DVAKRLMDYGFH PT+SWPV GT+M+EPTESESK+ELDR+CDALI+IR+EIA+IE GK D  +NVLK APH    L+   W  PY
Sbjct:  753 HPVVT---INDSTQHSHIGAVAAAPWGSASILVISWMYIAMMGADGLTQATKVAILNANYIAKKLESYYPVLYQGKNGLVAHECILDLRSLKKSAAIEIDDVAKRLMDYGFHAPTVSWPVGGTIMVEPTESESKQELDRFCDALIAIRQEIAEIEVGKVDAQDNVLKNAPHTAESLITGEWQHPY 934
The following BLAST results are available for this feature:
BLAST of CX296299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
GCSP2_ARATH2.526e-9589.19Glycine dehydrogenase [decarboxylating] 2, mitocho... [more]
GCSP_SOLTU8.374e-9588.11Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_PEA2.764e-9487.57Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP1_ARATH4.704e-9488.11Glycine dehydrogenase [decarboxylating] 1, mitocho... [more]
GCSPA_FLAPR9.259e-9488.11Glycine dehydrogenase [decarboxylating] A, mitocho... [more]
GCSP_FLAAN2.694e-9388.11Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSPB_FLAPR2.694e-9388.11Glycine dehydrogenase [decarboxylating] B, mitocho... [more]
GCSP_FLATR3.518e-9388.11Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_ANAVT2.012e-6463.78Glycine dehydrogenase [decarboxylating] OS=Anabaen... [more]
GCSP_NOSP79.985e-6463.78Glycine dehydrogenase [decarboxylating] OS=Nostoc ... [more]

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Properties
Property NameValue
Genbank descriptionC05138E08SK FerrChloL1 Citrus clementina cDNA clone C05138E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296299 ID=CX296299; Name=CX296299; organism=Citrus clementina; type=EST; length=578bp
CACTTGGCACCCTTTCTGCCTTCCATCCTGTGGTATCCACAGGTGGTATT
CCTGCCCCTGAAAAGTCTCAACCCCTGGGCACAATTGCAGCTGCACCCTG
GGGCTCTGCACTTATCCTGCCAATATCATATACGTACATAGCTATGATGG
GTTCTAAAGGACTCACTGAGGCTTCAAAGATAGCTATTCTGAATGCAAAC
TACATGGCAAAACGTTTGGAGAAACATTACCCCATCCTTTTCCGTGGTGT
CAATGGAACAGTTGCTCATGAATTCATTGTGGACTTAAGAGGCTTGAAGA
ATACTGCCGGGATAGAGCCCGAAGATGTTGCCAAACGTCTTATGGATTAT
GGATTCCATGGACCAACAATGTCATGGCCTGTTCCAGGCACACTTATGAT
TGAACCAACTGAAAGTGAAAGCAAGGAAGAGTTGGACAGGTATTGTGATG
CTCTCATCTCCATCAGAGAAGAAATTGCACAGATTGAAAATGGGAAGGCA
GATATCCACAACAATGTCCTGAAGGGGGCGCCTCATCCACCATCTTTGCT
CATGGGAGATACATGGACTAAACCATAC
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