CX296301

Overview
NameCX296301
Unique NameCX296301
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15331 contig Ccv1_Contig15331:354..981. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.527e-30
Identity = 76/149 (51.01%), Postives = 89/149 (59.73%), Query Frame = 3
Query:  183 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRD-CESEEEERKAKVVKTESADT-VNEFPLTPASCAAFWDLHLDWDCGVKGIFNAPLLSP 623
            HYRGVRRRPWGKYAAEIRDP ++GVRVWLGTFDT            F+LRGSKAILNFPLEAGK +       +   + +  + + KRKR   E E +    K VK E A    +  PLTP+S   FWD     D    GIF+ PLLSP
Sbjct:   71 HYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLEAGKHE-------DLGDNKKTISLKAKRKRQVTEDESQLISRKAVKREEAQVQADACPLTPSSWKGFWD---GADSKDMGIFSVPLLSP 209          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.152e-26
Identity = 72/157 (45.86%), Postives = 82/157 (52.23%), Query Frame = 3
Query:  183 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEEERKAKVVKTE----------SADTVNEFPLTPASCAAFWDLHLDWDCGVKGIFNAPLLSP 623
            HYRGVRRRPWGKYAAEIRDP ++G R+WLGT+DT            FQLRG KAILNFPL+          +  C      G    KRKRD  S  EE KA  VK E           A+     PLTP+S   FWD+         GIF+ P LSP
Sbjct:   87 HYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPLDV------RVTSETCSGEGVIGL--GKRKRDKGSPPEEEKAARVKVEEEESNTSETTEAEVEPVVPLTPSSWMGFWDVGAG-----DGIFSIPPLSP 230          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.567e-26
Identity = 73/148 (49.32%), Postives = 84/148 (56.76%), Query Frame = 3
Query:  183 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEEERKAKVVKTESADTVNEFPLTPASCAAFWDLHLDWDCGVKGIFNAPLLSPL 626
            HYRGVR+RPWGK+AAEIRDP +RG RVWLGTFDT            F+LRGSKAILNFPLE GK                A   E KRKRD + E+     KV+KTE +  VN     P   +   +L  DWD  + G  N PLLSPL
Sbjct:  155 HYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVGKW------------KPRADEGEKKRKRD-DDEKVTVVEKVLKTEQSVDVNGGETFPFVTSNLTEL-CDWD--LTGFLNFPLLSPL 286          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.753e-26
Identity = 70/148 (47.30%), Postives = 84/148 (56.76%), Query Frame = 3
Query:  183 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEEERKAKVVKTESADTVNEFPLTPASCAAFWDLHLDWDCGVKGIFNAPLLSPL 626
            HYRGVR+RPWGK+AAEIRDP R+G RVWLGTFDT            F+LRGSKAI+NFPLE       A   ++ +   +      KR R+ E+EE   K K VK E        PLTP+S +A W+         KGIF  P LSPL
Sbjct:  144 HYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFPLEV------ANFKQQDNEILQPANSGRKRMRETENEEIVIK-KEVKREERVPAAAAPLTPSSWSAIWEGE-----DGKGIFEVPPLSPL 279          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.838e-25
Identity = 71/148 (47.97%), Postives = 81/148 (54.73%), Query Frame = 3
Query:  183 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEEERKAKVVKTESADTVNEFPLTPASCAAFWDLHLDWDCGVKGIFNAPLLSPL 626
            HYRGVR RPWGK+AAEIRDPTRRG RVWLGTF+T            F+LRGSKAILNFPLE  K +  A   R             KRKRD E EE     KV+KTE +  V+      +   A      DWD  +    + PLLSPL
Sbjct:  136 HYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLEVDKWNPRAEDGR---------GLYNKRKRDGEEEEVTVVEKVLKTEESYDVSGGENVESGLTAI----DDWD--LTEFLSMPLLSPL 268          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.322e-25
Identity = 70/149 (46.98%), Postives = 86/149 (57.72%), Query Frame = 3
Query:  183 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAG--KCDSNAAVARECDSSAEAGACETKRKRDCESEEEERKAKVVKTESADTVNEFPLTPASCAAFWDLHLDWDCGVKGIFNAPLLSP 623
            HYRGVR+RPWGK+AAEIRDP R+G RVWLGTFDT            ++LRGSKAI+NFPLE    K + N  +    +SS        KR R+  +EE+    K +K E  + V   PLTP+S +A WD         KGIF  P LSP
Sbjct:  137 HYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFPLEVANFKQEFNNEIRPLVNSS-------RKRVRETVNEEQLVINKEMKIEE-ERVPTAPLTPSSWSAIWD-----SGDGKGIFEVPPLSP 272          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.997e-20
Identity = 51/110 (46.36%), Postives = 64/110 (58.18%), Query Frame = 3
Query:  183 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEEERKAKVVKTESAD 512
            HYRGVRRRPWGK+AAEIRDP ++G R+WLGTF++            F+LRG KA+LNFPL+AGK ++ A   R             KRKR    EE +R      + S D
Sbjct:  109 HYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPANSGR-------------KRKRSDVHEELQRTQSNSSSSSCD 205          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.039e-19
Identity = 45/91 (49.45%), Postives = 57/91 (62.64%), Query Frame = 3
Query:  183 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRD 455
            HYRGVRRRPWGK+AAEIRDP ++G R+WLGTF++            F+LRG KA+LNFPL+AGK D            A   +C  +R+ D
Sbjct:  106 HYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPLDAGKYD------------APVNSCRKRRRTD 184          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.572e-18
Identity = 50/118 (42.37%), Postives = 68/118 (57.63%), Query Frame = 3
Query:  183 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPL--EAGKCDSNAAVARECDSSAEAGACET------KRKRDCESEEEERKAKVVKTESAD 512
            HYRGVR+RPWGK+AAEIRDP + G RVWLGTF+T            F++RGS+A+LNFPL   +G+ D     ++   SS+ + +  T      K KR  ++E    +   VK E  D
Sbjct:  116 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLRVNSGEPDPVRITSKRSSSSSSSSSSSTSSSENGKLKRRRKAENLTSEVVQVKCEVGD 233          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.731e-18
Identity = 52/117 (44.44%), Postives = 67/117 (57.26%), Query Frame = 3
Query:  186 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACE---TKRKRDCESEEEERKAKVVKTESADTVNEF 527
            YRGVRRRPWGK+AAEIRDP + G RVWLGT++T            FQLRGSKA LNFP   G C       R    S E    +   +++KR  ES  ++ ++ +V  E   TV++F
Sbjct:   92 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLIGSCKYEPVRIRPRRRSPEPSVSDQLTSEQKR--ESHVDDGESSLVVPELDFTVDQF 206          
The following BLAST results are available for this feature:
BLAST of CX296301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
EF105_ARATH6.527e-3051.01Ethylene-responsive transcription factor ERF105 OS... [more]
EF104_ARATH1.152e-2645.86Ethylene-responsive transcription factor ERF104 OS... [more]
EF102_ARATH2.567e-2649.32Ethylene-responsive transcription factor 5 OS=Arab... [more]
ERF5_TOBAC9.753e-2647.30Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF103_ARATH2.838e-2547.97Ethylene-responsive transcription factor 6 OS=Arab... [more]
ERF5_NICSY6.322e-2546.98Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF106_ARATH7.997e-2046.36Ethylene-responsive transcription factor ERF106 OS... [more]
EF107_ARATH3.039e-1949.45Ethylene-responsive transcription factor ERF107 OS... [more]
EF101_ARATH2.572e-1842.37Ethylene-responsive transcription factor 2 OS=Arab... [more]
ERF99_ARATH5.731e-1844.44Ethylene-responsive transcription factor 13 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC05138E10SK FerrChloL1 Citrus clementina cDNA clone C05138E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296301 ID=CX296301; Name=CX296301; organism=Citrus clementina; type=EST; length=628bp
ACGAGGCCTCTTGCCGAATTCGGCACGAGGCGGAATTCGAACCCAAGCCT
AAAATATCTCCAAATTCATCCTCTCAATCGTCTCGCAAACCGTCGCTGAA
AATCTCAGTGCCTAAGAAAGCCGAAGGTCATCATTTCACCAACCGGAAAA
GCAAGGCCAAACCTGAGAGTTCGGAAGAAAAGCATTACAGAGGAGTTCGA
CGGAGGCCGTGGGGAAAGTACGCGGCCGAGATCCGAGATCCTACCCGGAG
AGGCGTACGTGTCTGGCTGGGGACATTTGACACGGCCATTGAAGCAGCTA
GGGCGTACGACCGTGCCGCTTTCCAGCTGCGCGGCTCGAAAGCGATCCTC
AACTTTCCTCTTGAAGCCGGCAAGTGCGACTCAAACGCTGCGGTGGCTAG
AGAGTGTGACTCGAGCGCCGAGGCTGGCGCGTGTGAAACGAAACGGAAGA
GGGACTGTGAAAGCGAAGAAGAGGAGAGAAAAGCCAAGGTGGTGAAAACG
GAGTCTGCGGATACAGTTAATGAATTTCCTTTGACGCCGGCGAGTTGCGC
GGCGTTTTGGGACTTGCATTTGGACTGGGACTGTGGTGTGAAAGGGATAT
TCAACGCCCCTCTACTGTCGCCGTTATC
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