CX296306

Overview
NameCX296306
Unique NameCX296306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length406
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296306 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.773e-19
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 2 
Query:   29 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 163
            GRLAMLAILGYF+QGLVTGVGPYQNLLDH+ADPVNNNVLTSLKFH
Sbjct:  231 GRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSLKFH 275
[Close]
BLAST of CX296306 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.286e-18
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 2 
Query:   29 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 163
            GRLAMLAILGYF+Q LVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct:  229 GRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273
The following BLAST results are available for this feature:
BLAST of CX296306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CB23_PEA5.773e-1995.56Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB13_SOLLC1.286e-1895.56Chlorophyll a-b binding protein 8, chloroplastic O... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05138F03SK FerrChloL1 Citrus clementina cDNA clone C05138F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296306 ID=CX296306; Name=CX296306; organism=Citrus clementina; type=EST; length=406bp
GAGGCCTCGTGCCGAATTCGGCACGAGGGGAAGATTGGCAATGTTGGCAA
TCTTGGGTTACTTTGTTCAAGGTCTTGTTACAGGAGTTGGGCCTTACCAG
AACCTATTGGATCACTTGGCTGATCCTGTCAACAACAATGTTTTGACTAG
CCTCAAGTTTCACTGAGAGAGAAATTTCTTGTTCATTGCTTGGAATTATA
TATTCCAAGCCTTGTCATCCCCCACTCTGTTCTATTCTACTTTCCCCATT
GTAAAATTATCTATGTGAAAAGTGAATGTAACTTGGCGGAAATGACATGT
TAATTGCTAAACTGGATCTCTTAGTTATTAATTTATGTACTGTTAGATTA
GCTAAATGCTTTGCTTAATCTTTTACCTCGTGCCGAATTCGGCGAGAGGG
CCCGGT
back to top