CX296313

Overview
NameCX296313
Unique NameCX296313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length531
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13748 contig Ccv1_Contig13748:631..1161. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRKY7_ARATH (Probable WRKY transcription factor 7 OS=Arabidopsis thaliana GN=WRKY7 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 4.287e-52
Identity = 111/176 (63.07%), Postives = 122/176 (69.32%), Query Frame = 3
Query:    6 ADHVPSSINFS----ASATNSFISSLTGTAGDTDSIQPSFSSGFQFTTXXXXXXXXXXXXXXX----RKCNSMDDAALKCGSSSGRCHCSKKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHAFAV 509
            A+  PS+INF+     SATNSF+SS      DTDS     SSGF+FT                    R+CNS         S S RCHCSKKRKSR+KRV RVPA+SSKMADIP D++SWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDD MMLIVTYEGDHNHA  +
Sbjct:  181 ANGAPSTINFAPSPPVSATNSFMSS---HRCDTDSTH--MSSGFEFTNPSQLSGSRGKPPLSSASLKRRCNS---------SPSSRCHCSKKRKSRVKRVIRVPAVSSKMADIPSDEFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDAMMLIVTYEGDHNHALVL 342          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK15_ARATH (Probable WRKY transcription factor 15 OS=Arabidopsis thaliana GN=WRKY15 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 5.794e-49
Identity = 99/175 (56.57%), Postives = 117/175 (66.86%), Query Frame = 3
Query:   30 NFSASATNSFISSLTGTAGDTDSIQ-------PSFSSGFQFTTXXXXXXXXXXXXXXXRKCNSMDDAALKCGS--SSGRCHCSKKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHAFAVHDAPAA 527
            +FS+S      SSL+    ++D+ +       PS ++ F   T               RKCNS +    KC S  SSGRCHCSKKRK + +R+ RVPAIS+KM+D+PPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERA DD  MLIVTYEGDHNH+ +  D   A
Sbjct:  133 SFSSSMKTIDFSSLSSVTTESDNQKKIHHHQRPSETAPFASQTQSLSTTVSSFSKSTKRKCNSENLLTGKCASASSSGRCHCSKKRKIKQRRIIRVPAISAKMSDVPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAADDSSMLIVTYEGDHNHSLSAADLAGA 307          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRKY1_MAIZE (Protein WRKY1 OS=Zea mays PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.208e-46
Identity = 94/159 (59.12%), Postives = 113/159 (71.07%), Query Frame = 3
Query:   24 SINFSASATNSFISSLTGTAGDTDSIQPSFSSG-FQFTTXXXXXXXXXXXXXXXRKCNSMDDAALKCGSSSGRCHCSKKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            S N +AS++ SF+SSL+   G   S+  S +S  FQ  +               R+C   +D   +C + S RCHCSKKRK RI+R  +VPAIS+K+ADIP D++SWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVER +DDP MLIVTYEGDHNH
Sbjct:  233 SSNCTASSSRSFLSSLS-MEGSLASLDGSRTSRPFQLLSGSQTASTPELGLVQRRRCAGREDGTGRCATGS-RCHCSKKRKLRIRRSIKVPAISNKVADIPADEFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCVDDPSMLIVTYEGDHNH 389          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK21_ARATH (Probable WRKY transcription factor 21 OS=Arabidopsis thaliana GN=WRKY21 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 5.996e-46
Identity = 97/163 (59.51%), Postives = 116/163 (71.17%), Query Frame = 3
Query:   21 SSINFSASATNSFISSLT--GTAGDTDSIQPSFSSGFQFTTXXXXXXXXXXXXXXXRKCNSMDD--AALKCGSSSGRCHCSKKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            SS   + S+T SF+SSL+  G+  + +  + SF  G   +T               RKC    D   +LKCGSSS RCHC+KKRK R++R  RVPAIS+K+ADIPPDDYSWRKYGQKPIKGSP+PRGYYKCSS+RGCPARKHVER L+DP MLIVTYE +HNH
Sbjct:  217 SSCTPTMSSTRSFVSSLSIDGSVANIEG-KNSFHFGVPSSTDQNSLHSK-------RKCPLKGDEHGSLKCGSSS-RCHCAKKRKHRVRRSIRVPAISNKVADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSMRGCPARKHVERCLEDPAMLIVTYEAEHNH 370          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK39_ARATH (Probable WRKY transcription factor 39 OS=Arabidopsis thaliana GN=WRKY39 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.929e-44
Identity = 89/154 (57.79%), Postives = 107/154 (69.48%), Query Frame = 3
Query:   39 ASATNSFISSLTGTAGDTDSIQPSFSSGFQFTTXXXXXXXXXXXXXXXRKCNSMDDAALKCGSSSGRCHCSKKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHA 500
            ++ + SF+SSL+  A  TD  + SF                       +    M   +LKCGS S +CHCSKKRK R+KR  +VPAIS+K+ADIPPD+YSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVER +D+  MLIVTYEG+HNH+
Sbjct:  180 SNGSRSFVSSLSMDASVTDYDRNSFH------------LTGLSRGSDQQHTRKMCSGSLKCGSRS-KCHCSKKRKLRVKRSIKVPAISNKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCIDETSMLIVTYEGEHNHS 320          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK11_ARATH (Probable WRKY transcription factor 11 OS=Arabidopsis thaliana GN=WRKY11 PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 9.572e-44
Identity = 93/172 (54.07%), Postives = 112/172 (65.12%), Query Frame = 3
Query:   21 SSINFSASATNSFISS-LTGTAGDTDS--------IQPSFSSGFQFTTXXXXXXXXXXXXXXXRKC----NSMDDAALKCGSSSGRCHCSKKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            S  NFS S  +SF+SS +TG    ++         +QP  SSG                    ++C    +S   +    GS+ G+CHC K RK+R+KR  RVPAIS+K+ADIPPD+YSWRKYGQKPIKGSPHPRGYYKCS+ RGCPARKHVERALDDP MLIVTYEG+H H
Sbjct:  142 SKENFSVSLNSSFMSSAITGDGSVSNGKIFLASAPLQPVNSSG----------KPPLAGHPYRKRCLEHEHSESFSGKVSGSAYGKCHCKKSRKNRMKRTVRVPAISAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDPAMLIVTYEGEHRH 303          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK74_ARATH (Probable WRKY transcription factor 74 OS=Arabidopsis thaliana GN=WRKY74 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.751e-43
Identity = 77/97 (79.38%), Postives = 89/97 (91.75%), Query Frame = 3
Query:  210 ALKCGSSSGRCHCSKKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHA 500
            +LKCGS S +CHCSKKRK R+KR  +VPAIS+K+ADIPPD+YSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVER +++  MLIVTYEG+HNH+
Sbjct:  225 SLKCGSKS-KCHCSKKRKLRVKRSIKVPAISNKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCVEETSMLIVTYEGEHNHS 320          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK17_ARATH (Probable WRKY transcription factor 17 OS=Arabidopsis thaliana GN=WRKY17 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 1.805e-42
Identity = 84/160 (52.50%), Postives = 102/160 (63.75%), Query Frame = 3
Query:   30 NFSASATNSFISSLTGTAGDTDSIQPSFSSGFQFTTXXXXXXXXXXXXXXXRKCNSMDDA----ALKCGSSSGRCHCSKKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            +FS S+ +SF+SS     G        F +                     ++C   D +        GS +G+CHC K RK+R+KR  RVPA+S+K+ADIPPD+YSWRKYGQKPIKGSPHPRGYYKCS+ RGCPARKHVERALDD  MLIVTYEG+H H
Sbjct:  141 SFSVSSNSSFMSSAITGDGSVSKGSSIFLAPAPAVPVTSSGKPPLSGLPYRKRCFEHDHSEGFSGKISGSGNGKCHCKKSRKNRMKRTVRVPAVSAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDSTMLIVTYEGEHRH 300          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK35_ARATH (Probable WRKY transcription factor 35 OS=Arabidopsis thaliana GN=WRKY35 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.100e-23
Identity = 53/96 (55.21%), Postives = 71/96 (73.96%), Query Frame = 3
Query:  225 SSSGRCHCSKKRKSRIKRVTRVPA---ISSKMAD--IPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            SSS R    K+RKS+ K+V  +PA   ++S+ +   +P D ++WRKYGQKPIKGSP+PRGYY+CSS +GC ARK VER+  DP ML++TY  +HNH
Sbjct:  177 SSSPRNLGIKRRKSQAKKVVCIPAPAAMNSRSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNH 272          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK65_ARATH (Probable WRKY transcription factor 65 OS=Arabidopsis thaliana GN=WRKY65 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.181e-23
Identity = 50/88 (56.82%), Postives = 62/88 (70.45%), Query Frame = 3
Query:  252 KKRKSRIKRVTRVPAI----SSKMADIPP--DDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            + R+S  KRV  VP      S    D  P  D ++WRKYGQKPIKGSP+PRGYY+CSS +GCPARK VER+ DDP M+++TY  +HNH
Sbjct:   44 RSRRSVEKRVVNVPMKEMEGSRHKGDTTPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSTKGCPARKQVERSRDDPTMILITYTSEHNH 131          
The following BLAST results are available for this feature:
BLAST of CX296313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
WRKY7_ARATH4.287e-5263.07Probable WRKY transcription factor 7 OS=Arabidopsi... [more]
WRK15_ARATH5.794e-4956.57Probable WRKY transcription factor 15 OS=Arabidops... [more]
WRKY1_MAIZE1.208e-4659.12Protein WRKY1 OS=Zea mays PE=1 SV=1[more]
WRK21_ARATH5.996e-4659.51Probable WRKY transcription factor 21 OS=Arabidops... [more]
WRK39_ARATH1.929e-4457.79Probable WRKY transcription factor 39 OS=Arabidops... [more]
WRK11_ARATH9.572e-4454.07Probable WRKY transcription factor 11 OS=Arabidops... [more]
WRK74_ARATH4.751e-4379.38Probable WRKY transcription factor 74 OS=Arabidops... [more]
WRK17_ARATH1.805e-4252.50Probable WRKY transcription factor 17 OS=Arabidops... [more]
WRK35_ARATH1.100e-2355.21Probable WRKY transcription factor 35 OS=Arabidops... [more]
WRK65_ARATH4.181e-2356.82Probable WRKY transcription factor 65 OS=Arabidops... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05138F11SK FerrChloL1 Citrus clementina cDNA clone C05138F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296313 ID=CX296313; Name=CX296313; organism=Citrus clementina; type=EST; length=531bp
ACGAGGCCGATCATGTGCCAAGTAGTATCAATTTCTCAGCCTCTGCCACA
AATTCTTTCATATCCTCGCTCACAGGCACAGCAGGGGATACCGACAGCAT
ACAACCTTCTTTCTCATCTGGGTTTCAATTTACCACACCATCATCAGCTG
GAAAGCCACCTCTGTCTTCTTCCTCGCTCAAGAGAAAGTGCAATTCCATG
GATGATGCTGCTCTCAAGTGTGGCTCATCTTCAGGGCGCTGCCATTGCTC
CAAGAAGAGAAAATCAAGGATTAAGAGAGTGACTAGAGTTCCAGCGATAA
GCTCTAAGATGGCTGATATTCCACCTGATGATTACTCCTGGAGAAAGTAT
GGCCAGAAACCCATCAAAGGTTCTCCTCATCCAAGGGGATATTACAAGTG
TAGTAGCGTGAGAGGCTGTCCAGCACGCAAACACGTGGAACGTGCACTTG
ACGATCCAATGATGCTGATTGTCACATACGAAGGTGATCACAACCACGCC
TTCGCTGTTCATGATGCACCTGCTGCTATGG
back to top