CX296319

Overview
NameCX296319
Unique NameCX296319
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10149 contig Ccv1_Contig10149:161..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 1.569e-87
Identity = 148/156 (94.87%), Postives = 151/156 (96.79%), Query Frame = 1
Query:   67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPD 534
            F  TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVEEVFFSI RDIKQRL+DTDSRAEP TIKI+Q D
Sbjct:   44 FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEPATIKISQTD 199          

HSP 2 Score: 49.6766 bits (117), Expect = 1.569e-87
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSCLLLRFSDGSFTTSFIT +
Sbjct:   24 SGVGKSCLLLRFSDGSFTTSFITTI 48          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 2.243e-83
Identity = 141/148 (95.27%), Postives = 144/148 (97.30%), Query Frame = 1
Query:   67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQ 510
            F  TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD+D+R E Q
Sbjct:   44 FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADSDTRQEAQ 191          

HSP 2 Score: 49.6766 bits (117), Expect = 2.243e-83
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSCLLLRFSDGSFTTSFIT +
Sbjct:   24 SGVGKSCLLLRFSDGSFTTSFITTI 48          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 5.876e-66
Identity = 113/151 (74.83%), Postives = 133/151 (88.08%), Query Frame = 1
Query:   67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIK 519
            F  TIGIDFKIRTIEL+GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF NIRNWIRNIEQHA+D+VNK+L+GNK DM E K+ V +S+G++LADEYGIKF ETSAK ++NVEE F S+A+DIK+R+ DT +  +PQ ++
Sbjct:   44 FITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAE-KKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTPNE-QPQVVQ 192          

HSP 2 Score: 43.1282 bits (100), Expect = 5.876e-66
Identity = 20/25 (80.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSCLLLRFS+ SFT SFIT +
Sbjct:   24 SGVGKSCLLLRFSEDSFTPSFITTI 48          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.890e-65
Identity = 110/141 (78.01%), Postives = 126/141 (89.36%), Query Frame = 1
Query:   67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 489
            F  TIGIDFKIRTIEL+GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF +IRNWIRNIEQHASD+VNK+L+GNK DM E K+ V +S+G++LADEYGIKF ETSAK ++NVEE F  +A+DIK+R+ DT
Sbjct:   44 FIATIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTE-KKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKRMIDT 183          

HSP 2 Score: 45.4394 bits (106), Expect = 2.890e-65
Identity = 21/25 (84.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSCLLLRFSDGSFT SFI  +
Sbjct:   24 SGVGKSCLLLRFSDGSFTPSFIATI 48          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 6.922e-61
Identity = 97/138 (70.29%), Postives = 121/138 (87.68%), Query Frame = 1
Query:   67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 480
            F  TIGIDFKI+ +++DGK +KLQIWDTAGQERFRTIT+AYYRGA GI+LVYD+TDE+SFNN+RNW+RNIEQHASDNVNKILVGNK D+ E KR V  ++GQALADE+G +F+ETSAK N++VEE F ++A+D+  R+
Sbjct:   42 FITTIGIDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVAKDVLARM 179          

HSP 2 Score: 42.3578 bits (98), Expect = 6.922e-61
Identity = 19/25 (76.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSCLLLRF+D  FT+SFIT +
Sbjct:   22 SGVGKSCLLLRFTDDMFTSSFITTI 46          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 2.003e-60
Identity = 103/153 (67.32%), Postives = 124/153 (81.05%), Query Frame = 1
Query:   67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKIN 525
            F  TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL+YDVTD+ SF+N+R W  N+EQHAS+NV KIL+GNK D  E +R V   +GQALADE G+KF E SAKTN+NV+E FF++AR+IK++  D ++    Q   ++
Sbjct:   38 FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDC-EDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAENEFSNQANNVD 189          

HSP 2 Score: 43.1282 bits (100), Expect = 2.003e-60
Identity = 20/25 (80.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSCLLLRFS+ SFT SFIT +
Sbjct:   18 SGVGKSCLLLRFSEDSFTPSFITTI 42          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 7.463e-57
Identity = 101/158 (63.92%), Postives = 129/158 (81.65%), Query Frame = 1
Query:   67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI----KQRLADTDSRAEPQTIKINQ 528
            F  TIGIDFKIRTIELDGK+IKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NI+NWIRNIE+HAS +V ++++GNK DM++ KR V   +G+ LA +YGIKF ETSAK++ NVEE FF++ARDI     +++ D++S      +KI +
Sbjct:   37 FISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMND-KRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITE 193          

HSP 2 Score: 36.965 bits (84), Expect = 7.463e-57
Identity = 15/25 (60.00%), Postives = 21/25 (84.00%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGK+CLL RFS+ +F T+FI+ +
Sbjct:   17 SGVGKTCLLFRFSEDAFNTTFISTI 41          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 7.463e-57
Identity = 101/158 (63.92%), Postives = 129/158 (81.65%), Query Frame = 1
Query:   67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI----KQRLADTDSRAEPQTIKINQ 528
            F  TIGIDFKIRTIELDGK+IKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NI+NWIRNIE+HAS +V ++++GNK DM++ KR V   +G+ LA +YGIKF ETSAK++ NVEE FF++ARDI     +++ D++S      +KI +
Sbjct:   37 FISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMND-KRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSAGAGGPVKITE 193          

HSP 2 Score: 36.965 bits (84), Expect = 7.463e-57
Identity = 15/25 (60.00%), Postives = 21/25 (84.00%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGK+CLL RFS+ +F T+FI+ +
Sbjct:   17 SGVGKTCLLFRFSEDAFNTTFISTI 41          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 7.463e-57
Identity = 101/158 (63.92%), Postives = 129/158 (81.65%), Query Frame = 1
Query:   67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI----KQRLADTDSRAEPQTIKINQ 528
            F  TIGIDFKIRTIELDGK+IKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NI+NWIRNIE+HAS +V ++++GNK DM++ KR V   +G+ LA +YGIKF ETSAK++ NVEE FF++ARDI     +++ D++S      +KI +
Sbjct:   37 FISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMND-KRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITE 193          

HSP 2 Score: 36.965 bits (84), Expect = 7.463e-57
Identity = 15/25 (60.00%), Postives = 21/25 (84.00%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGK+CLL RFS+ +F T+FI+ +
Sbjct:   17 SGVGKTCLLFRFSEDAFNTTFISTI 41          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 7.463e-57
Identity = 101/158 (63.92%), Postives = 129/158 (81.65%), Query Frame = 1
Query:   67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI----KQRLADTDSRAEPQTIKINQ 528
            F  TIGIDFKIRTIELDGK+IKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NI+NWIRNIE+HAS +V ++++GNK DM++ KR V   +G+ LA +YGIKF ETSAK++ NVEE FF++ARDI     +++ D++S      +KI +
Sbjct:   37 FISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMND-KRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNSAGAGGPVKITE 193          

HSP 2 Score: 36.965 bits (84), Expect = 7.463e-57
Identity = 15/25 (60.00%), Postives = 21/25 (84.00%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGK+CLL RFS+ +F T+FI+ +
Sbjct:   17 SGVGKTCLLFRFSEDAFNTTFISTI 41          
The following BLAST results are available for this feature:
BLAST of CX296319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ARA3_ARATH1.569e-8794.87Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RB1BV_BETVU2.243e-8395.27Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
RAB8A_DICDI5.876e-6674.83Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB8B_DICDI2.890e-6578.01Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
YPTV2_VOLCA6.922e-6170.29GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
YPT2_SCHPO2.003e-6067.32GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RAB8B_RAT7.463e-5763.92Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_PONAB7.463e-5763.92Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_MOUSE7.463e-5763.92Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB8B_HUMAN7.463e-5763.92Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]

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Properties
Property NameValue
Genbank descriptionC05138G08SK FerrChloL1 Citrus clementina cDNA clone C05138G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296319 ID=CX296319; Name=CX296319; organism=Citrus clementina; type=EST; length=718bp
ACGAGGCAGCGGTGTTGGTAAGAGTTGTCTCCTTCTGCGATTCTCTGATG
GTTCCTTTACTACCAGTTTTATTACACCATTGGTATTGACTTCAAGATTA
GGACCATAGAGCTTGATGGAAAACGAATTAAACTTCAAATATGGGATACT
GCAGGTCAAGAGAGGTTTCGAACAATTACAACCGCATACTACCGAGGAGC
CATGGGAATATTGCTCGTATATGATGTCACCGACGAGTCATCTTTCAACA
ACATTAGGAATTGGATCCGTAATATCGAACAGCATGCATCTGACAATGTA
AACAAGATTCTGGTGGGTAACAAGGCCGACATGGATGAAAGCAAAAGGGC
TGTCCCCACTTCAAAGGGCCAAGCTCTTGCTGATGAATATGGCATCAAGT
TCTTTGAGACTAGTGCAAAGACAAACCTAAATGTGGAGGAGGTTTTCTTT
TCAATTGCAAGGGACATCAAGCAAAGGCTTGCAGATACAGACTCTAGGGC
TGAGCCTCAGACTATCAAAATTAACCAACCTGACCAGGCAGGTGGGGCTG
CTCAAGCTGCCCAAAGATCAGCTTGCTGCGGTTCTTAAGCAATCTATGCG
GGTGAGATCACATGGGTATATGTCAAGGCAATCATTTTGGTTGGGACAAC
TAATTTTGTCAACTATATCATTGGGGCTTGTATTGGTCTATCATTATTTT
ACACTACCACACGCTTGC
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