CX296321

Overview
NameCX296321
Unique NameCX296321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RK1_ARATH (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.101e-45
Identity = 83/99 (83.84%), Postives = 95/99 (95.96%), Query Frame = -3
Query:  247 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPS 543
            PNPKAGTVT NIPQAIEEFKKGKVE+RADKTGIVHIPFGK +F+E+DLLINFLAA+KS+E NKPKGAKGVYWKSA+ICSSMGPSI+LNI+EM+D+K P+
Sbjct:  246 PNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTEEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPT 344          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RK1_SPIOL (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea GN=RPL1 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.593e-41
Identity = 79/100 (79.00%), Postives = 87/100 (87.00%), Query Frame = -3
Query:  244 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSN 543
            P PKAGTVT N+ QA+EEFKKGKVE+R DKTGIVHIPFGK +F E+DLLIN  A IKS+E NKP GAKGVYWKSA+I SSMGPSIRLNI+EMLDYK PSN
Sbjct:  252 PTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSN 351          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RK1_RHDSA (50S ribosomal protein L1, chloroplastic OS=Rhodomonas salina GN=rpl1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.185e-30
Identity = 62/94 (65.96%), Postives = 76/94 (80.85%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            P+PK+GTVT +I +AI+EFKKGK+EYRADK+GIVHI FGK DFS +DLL N  A  +SI+ N+P G KG YWKS YICS+MGPSI+L+I E  D
Sbjct:  137 PSPKSGTVTADIKEAIDEFKKGKLEYRADKSGIVHILFGKTDFSVEDLLANLEAVQESIDKNRPSGVKGRYWKSFYICSTMGPSIQLDISEFRD 230          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RK1_GUITH (50S ribosomal protein L1, chloroplastic OS=Guillardia theta GN=rpl1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.185e-30
Identity = 61/94 (64.89%), Postives = 77/94 (81.91%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            P+PK+GTVT+++  AIEEFKKGK+EYRADK+GIVHI FGK +FS +DLL+N  A  +SI+ N+P G KG YWKS YICS+MGPSI+L+I E  D
Sbjct:  137 PSPKSGTVTSDVKSAIEEFKKGKLEYRADKSGIVHISFGKTNFSVNDLLLNLEAVQESIDKNRPAGVKGKYWKSFYICSTMGPSIQLDISEFRD 230          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_THEEB (50S ribosomal protein L1 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.120e-29
Identity = 57/97 (58.76%), Postives = 79/97 (81.44%), Query Frame = -3
Query:  253 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 543
            P+PKAGTVT ++PQAI+EFK GKVE+RAD++GIVH+ FGKA FS +DLL+N  A  +SI+ N+P GAKG YW+S Y+ ++MGPSI+++I  + + KL
Sbjct:  137 PSPKAGTVTFDLPQAIQEFKAGKVEFRADRSGIVHVLFGKASFSAEDLLVNLKALQESIDRNRPSGAKGRYWRSVYVAATMGPSIQVDINALRELKL 233          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_ANAVT (50S ribosomal protein L1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.556e-28
Identity = 56/97 (57.73%), Postives = 76/97 (78.35%), Query Frame = -3
Query:  253 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 543
            P+PK GTVT +I  AI EFK GK+E+RAD+TGIVH+ FGKA FS +DLL+N  A  ++I+ N+P GAKG YW++ Y+ ++MGPSIR++I  + DYKL
Sbjct:  138 PSPKGGTVTFDIASAIAEFKAGKLEFRADRTGIVHVMFGKASFSPEDLLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKL 234          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_MICAN (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) GN=rplA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.950e-28
Identity = 55/97 (56.70%), Postives = 76/97 (78.35%), Query Frame = -3
Query:  253 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 543
            P+PK GTVTT++  AI EFK GK+E+RAD+TGIVH+ FGKA FS +DLL+N  A  ++++ N+P GAKG YW++ Y+ SSMGPSI+++I  + D KL
Sbjct:  138 PSPKGGTVTTDLTGAIAEFKAGKLEFRADRTGIVHVQFGKASFSAEDLLVNLKALQETVDRNRPSGAKGRYWRTVYVSSSMGPSIQVDISALRDLKL 234          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_ANASP (50S ribosomal protein L1 OS=Anabaena sp. (strain PCC 7120) GN=rplA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.950e-28
Identity = 55/97 (56.70%), Postives = 76/97 (78.35%), Query Frame = -3
Query:  253 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 543
            P+PK GTVT ++  AI EFK GK+E+RAD+TGIVH+ FGKA FS +DLL+N  A  ++I+ N+P GAKG YW++ Y+ ++MGPSIR++I  + DYKL
Sbjct:  138 PSPKGGTVTFDVASAIAEFKAGKLEFRADRTGIVHVMFGKASFSPEDLLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKL 234          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_ACAM1 (50S ribosomal protein L1 OS=Acaryochloris marina (strain MBIC 11017) GN=rplA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.015e-27
Identity = 57/97 (58.76%), Postives = 74/97 (76.29%), Query Frame = -3
Query:  253 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 543
            P+PKAGTVT ++PQAIEEFK GK+E+RAD+TGIVH+ FGKA FS  DLL N  A   +I+ N+P GAKG YW+S Y+ ++MGPSI ++I  + D  L
Sbjct:  138 PSPKAGTVTFDLPQAIEEFKAGKLEFRADRTGIVHVMFGKAKFSAQDLLENLKALQDTIDRNRPSGAKGRYWRSLYVSATMGPSIEVDISSLRDLNL 234          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RK1_PORYE (50S ribosomal protein L1, chloroplastic OS=Porphyra yezoensis GN=rpl1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.325e-27
Identity = 52/93 (55.91%), Postives = 75/93 (80.65%), Query Frame = -3
Query:  265 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 543
            P+PKAGTVT ++ +A+ EFK GKVEYR D+TGI+H+PFGK+ FS++DL++N     +SI+ NKP GAKG YWK+ ++ S+MGPSI+++I  +L
Sbjct:  137 PSPKAGTVTLDVAKAVNEFKGGKVEYRVDRTGIIHVPFGKSSFSQEDLVLNLQTIKESIDRNKPSGAKGKYWKTFFLSSTMGPSIQIDITSLL 229          
The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK1_ARATH4.101e-4583.8450S ribosomal protein L1, chloroplastic OS=Arabido... [more]
RK1_SPIOL3.593e-4179.0050S ribosomal protein L1, chloroplastic OS=Spinaci... [more]
RK1_RHDSA2.185e-3065.9650S ribosomal protein L1, chloroplastic OS=Rhodomo... [more]
RK1_GUITH2.185e-3064.8950S ribosomal protein L1, chloroplastic OS=Guillar... [more]
RL1_THEEB4.120e-2958.7650S ribosomal protein L1 OS=Thermosynechococcus el... [more]
RL1_ANAVT4.556e-2857.7350S ribosomal protein L1 OS=Anabaena variabilis (s... [more]
RL1_MICAN5.950e-2856.7050S ribosomal protein L1 OS=Microcystis aeruginosa... [more]
RL1_ANASP5.950e-2856.7050S ribosomal protein L1 OS=Anabaena sp. (strain P... [more]
RL1_ACAM11.015e-2758.7650S ribosomal protein L1 OS=Acaryochloris marina (... [more]
RK1_PORYE1.325e-2755.9150S ribosomal protein L1, chloroplastic OS=Porphyr... [more]

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Properties
Property NameValue
Genbank descriptionC05138G11SK FerrChloL1 Citrus clementina cDNA clone C05138G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bp
GCGAGGCCTCGTGCCGAATTCGCACGAGGTTCAGTACGGAAAAAAGCCAT
GCGGTATGCATTTTTCCTTTTTTTTTTATTTGCTACAATCTCATCCACAT
TGATAATCTAGATCTCCTCACCTCACCATAATTCGCTCTCCTACAACTTT
TGCCAAGCAGTGGCAAGCCCTGGCATGGGTATCAAAGAGGCTGACTGAAC
AGTTAAAGATATCATTTACAAAATTTAGTTATGTCGTTTAGAAATTTGAT
GGAAGCTTGTAATCGAGCATTTCTTTTATGTTTAATCGAATGGAAGGTCC
CATTGATGAGCAAATGTAAGCACTTTTCCAGTACACTCCTTTGGCCCCTT
TTGGCTTGTTTGCTTCAATTGATTTAATAGCAGCAAGGAAGTTTATGAGG
AGGTCATCTTCAGAAAAATCAGCTTTCCCAAAAGGTATGTGGACAATCCC
AGTTTTATCTGCTCTATATTCAACTTTTCCCTTCTTGAATTCTTCTATGG
CCTGAGGTATGTTAGTTGTAACAGTACCAGCTTTAGGATTTGGCA
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