CX296323

Overview
NameCX296323
Unique NameCX296323
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig684 contig Ccv1_Contig684:1..621. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX296323 vs. ExPASy Swiss-Prot
Match: TL15A_ARATH (Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana GN=At2g44920 PE=1 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 2.660e-60
Identity = 119/154 (77.27%), Postives = 127/154 (82.47%), Query Frame = 2 
Query:  158 LFSLCESVTKTSFLALVSASLFFVDPALAFKGGGPYGSEVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGXXXXXXXXXXXXXXXXNVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDDQRGYLCKVA 619
            ++SL E V+K S  ALVSASLFFVDPALAFKGGGPYG  VTRGQDL+GKDFSG+TLI+QDFKTSILRQANFKGAKLLGASFFDADLTG                NVTK NL+NANLEGA  TGNTSF+GSNITGADFTDVPLRDDQR YLCKVA
Sbjct:   53 VWSLGEEVSKRSLFALVSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTGNTSFKGSNITGADFTDVPLRDDQRVYLCKVA 206
The following BLAST results are available for this feature:
BLAST of CX296323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TL15A_ARATH2.660e-6077.27Thylakoid lumenal 15 kDa protein 1, chloroplastic ... [more]
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Properties
Property NameValue
Genbank descriptionC05138H01SK FerrChloL1 Citrus clementina cDNA clone C05138H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296323 ID=CX296323; Name=CX296323; organism=Citrus clementina; type=EST; length=621bp
ACGAGGTCTGAACGTCTCCATGTCTTCCAAATTCACGCAAATACCTCCAA
TTTCTTCCACCAAACCCCTCTTCACATTGACAAACCCACTTGTCTCCTTC
CCAGGCCACTCTTCGCCTCAGTTGCTGAAGTGTCAGATAAAGTCTCAGGA
GAATTTTCTCTTTTCTTTATGTGAGTCGGTGACTAAAACCAGCTTTCTAG
CTCTTGTTTCTGCTTCTTTGTTCTTCGTTGATCCTGCTCTGGCATTTAAG
GGGGGAGGTCCATATGGATCTGAAGTGACAAGGGGTCAAGATCTTACAGG
GAAGGACTTTAGCGGCAAGACTTTGATCAAGCAAGACTTCAAAACGTCTA
TATTGAGACAAGCCAATTTTAAGGGTGCCAAGTTACTGGGTGCTAGCTTC
TTTGATGCTGATTTAACAGGGGCTGATCTTTCAGATGCTGATCTCAGAAG
TGCAGACTTCTCATTGGCAAATGTGACAAAGGCAAACTTGAGTAATGCTA
ACTTGGAAGGTGCTCTTGCTACTGGCAACACCTCTTTCAGGGGATCGAAT
ATAACCGGAGCTGACTTCACCGACGTGCCTTTGAGAGATGATCAACGGGG
ATATCTGTGCAAAGTTGCAGA
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