CX296325

Overview
NameCX296325
Unique NameCX296325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1039 contig Ccv1_Contig1039:166..593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX296325 vs. ExPASy Swiss-Prot
Match: ARG2_PHAAU (Indole-3-acetic acid-induced protein ARG2 OS=Phaseolus aureus GN=ARG2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.155e-15
Identity = 43/90 (47.78%), Postives = 51/90 (56.67%), Query Frame = 1 
Query:   19 FLNAKLFSAFVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFL 288
            F N K+ SA VADG SN   + G++AA+                M+ K  EE     EKVSWVPDPVTG YRPEN  NE+D AD+RA  L
Sbjct:    5 FTNVKVLSALVADGFSNTTTRHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVRGGEKVSWVPDPVTGYYRPEN-TNEIDVADMRATVL 93
[Close]
BLAST of CX296325 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.117e-11
Identity = 43/94 (45.74%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:   13 SLFLNAKLFSAFVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 294
            SLF  AKL  A VADGIS +I +RGY+AA+                 L+    E +G+S   +W PDP+TG YRPEN A E+D A+LR M L H
Sbjct:    4 SLF-KAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKND--LRPAVREDSGASS--AWAPDPITGYYRPENRAVEIDPAELREMLLNH 92
The following BLAST results are available for this feature:
BLAST of CX296325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ARG2_PHAAU3.155e-1547.78Indole-3-acetic acid-induced protein ARG2 OS=Phase... [more]
LEA5_CITSI2.117e-1145.74Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
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Properties
Property NameValue
Genbank descriptionC05138H04SK FerrChloL1 Citrus clementina cDNA clone C05138H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296325 ID=CX296325; Name=CX296325; organism=Citrus clementina; type=EST; length=430bp
CGAGGAAATGGCTCGCTCTTTCTCAACGCTAAGCTTTTCTCTGCTTTCGT
CGCTGACGGAATCTCTAACGCCATCTACAAAAGAGGATACTCGGCGGCAT
CACAAGGCGCTGTGTCGCGGGCAACAGGGGGAGCTAGGAGTGCTGCTGCG
ATGTTGAAGAAACCAGCAGAAGAGATGACAGGATCCAGTGAGAAGGTCTC
GTGGGTCCCAGACCCAGTCACTGGTGTCTACAGGCCGGAGAATCTCGCCA
ACGAGCTCGATGGGGCCGACCTCAGAGCCATGTTCTTGAAGCACAACAAC
TGATCATCAAAATTAATAAGTATTATTATTAATATATATTAATTCGGACA
TGGAAACTGAGGAAGGACGAAAGAAAAATTAAAAAAAAGATTAAAAAGGG
ATTTGTTCTGATGTGGTCAGCCGCATGAGC
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