CX296334

Overview
NameCX296334
Unique NameCX296334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length355
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13989 contig Ccv1_Contig13989:376..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296334 vs. ExPASy Swiss-Prot
Match: Y1461_ARATH (Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.108e-37
Identity = 71/118 (60.17%), Postives = 89/118 (75.42%), Query Frame = 1
Query:    1 EEERARAETEKNRRHTGDFGPPERRRPHSESQQGWPSWLMAVAGDAIRDWTPRRANTFEKLDKIGQGTYSNVYKARDLLTGKIVALKKVRFDNLEPESVKFMAREILVLRKLDHPNVI 354
            E + ++ +  ++ +       P +     +   GWPSWL    G+A+  W PR+A+TFEK+DKIGQGTYSNVYKA+D+LTGKIVALKKVRFDNLEPESVKFMAREILVLR+LDHPNV+
Sbjct:   61 ERKSSKGDRRRSTKPNPRLSNPSKHWRGEQVAAGWPSWLSDACGEALNGWVPRKADTFEKIDKIGQGTYSNVYKAKDMLTGKIVALKKVRFDNLEPESVKFMAREILVLRRLDHPNVV 178          
BLAST of CX296334 vs. ExPASy Swiss-Prot
Match: CDKC2_ARATH (Cyclin-dependent kinase C-2 OS=Arabidopsis thaliana GN=CDKC-2 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 8.067e-13
Identity = 38/70 (54.29%), Postives = 49/70 (70.00%), Query Frame = 1
Query:  148 WTPRRANTFEKLDKIGQGTYSNVYKARDLLTGKIVALKKVRFDNLEPESVKFMA-REILVLRKLDHPNVI 354
            W  R  + FEKL++IG+GTY  VY A+++ TG+IVALKK+R DN E E     A REI +L+KL H NVI
Sbjct:   18 WGSRSVDCFEKLEQIGEGTYGQVYMAKEIKTGEIVALKKIRMDN-EREGFPITAIREIKILKKLHHENVI 86          
BLAST of CX296334 vs. ExPASy Swiss-Prot
Match: CDKC1_ARATH (Cyclin-dependent kinase C-1 OS=Arabidopsis thaliana GN=CDKC-1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.067e-13
Identity = 38/70 (54.29%), Postives = 49/70 (70.00%), Query Frame = 1
Query:  148 WTPRRANTFEKLDKIGQGTYSNVYKARDLLTGKIVALKKVRFDNLEPESVKFMA-REILVLRKLDHPNVI 354
            W  R  + FEKL++IG+GTY  VY A+++ TG+IVALKK+R DN E E     A REI +L+KL H NVI
Sbjct:   18 WGSRSVDCFEKLEQIGEGTYGQVYMAKEIKTGEIVALKKIRMDN-EREGFPITAIREIKILKKLHHENVI 86          
BLAST of CX296334 vs. ExPASy Swiss-Prot
Match: CDKC1_ORYSJ (Cyclin-dependent kinase C-1 OS=Oryza sativa subsp. japonica GN=CDKC-1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.829e-12
Identity = 39/75 (52.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query:  133 DAIRDWTPRRANTFEKLDKIGQGTYSNVYKARDLLTGKIVALKKVRFDNLEPESVKFMA-REILVLRKLDHPNVI 354
            D    W  R  + FEKL++IG+GTY  VY AR+  T +IVALKK+R DN E E     A REI +L+KL H NVI
Sbjct:   12 DESPSWGSRSVDCFEKLEQIGEGTYGQVYMARETETQEIVALKKIRMDN-EREGFPITAIREIKILKKLHHQNVI 85          
BLAST of CX296334 vs. ExPASy Swiss-Prot
Match: CDK3_MOUSE (Cell division protein kinase 3 OS=Mus musculus GN=Cdk3 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.829e-12
Identity = 36/64 (56.25%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  166 NTFEKLDKIGQGTYSNVYKARDLLTGKIVALKKVRFDNLEPESVKFMA-REILVLRKLDHPNVI 354
            + F+K++KIG+GTY  VYKAR+ +TG++VALKK+R D LE E V   A REI +L++L HPN+I
Sbjct:    2 DVFQKVEKIGEGTYGVVYKARNKVTGQLVALKKIRLD-LEAEGVPSTAVREISLLKELKHPNII 64          
BLAST of CX296334 vs. ExPASy Swiss-Prot
Match: CDK2_HUMAN (Cell division protein kinase 2 OS=Homo sapiens GN=CDK2 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.829e-12
Identity = 35/62 (56.45%), Postives = 49/62 (79.03%), Query Frame = 1
Query:  172 FEKLDKIGQGTYSNVYKARDLLTGKIVALKKVRFDNLEPESVKFMA-REILVLRKLDHPNVI 354
            F+K++KIG+GTY  VYKAR+ LTG++VALKK+R D  E E V   A REI +L++L+HPN++
Sbjct:    4 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDT-ETEGVPSTAIREISLLKELNHPNIV 64          
BLAST of CX296334 vs. ExPASy Swiss-Prot
Match: CDKC2_ORYSJ (Cyclin-dependent kinase C-2 OS=Oryza sativa subsp. japonica GN=CDKC-2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.919e-12
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:  133 DAIRDWTPRRANTFEKLDKIGQGTYSNVYKARDLLTGKIVALKKVRFDNLEPESVKFMA-REILVLRKLDHPNVI 354
            D    W  R  + FEKL++IG+GTY  VY A++  T +IVALKK+R DN E E     A REI +L+KL H NVI
Sbjct:   12 DESPSWGSRSVDCFEKLEQIGEGTYGQVYMAKETETNEIVALKKIRMDN-EREGFPITAIREIKILKKLHHQNVI 85          
BLAST of CX296334 vs. ExPASy Swiss-Prot
Match: CDK2_RAT (Cell division protein kinase 2 OS=Rattus norvegicus GN=Cdk2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.521e-11
Identity = 34/62 (54.84%), Postives = 49/62 (79.03%), Query Frame = 1
Query:  172 FEKLDKIGQGTYSNVYKARDLLTGKIVALKKVRFDNLEPESVKFMA-REILVLRKLDHPNVI 354
            F+K++KIG+GTY  VYKA++ LTG++VALKK+R D  E E V   A REI +L++L+HPN++
Sbjct:    4 FQKVEKIGEGTYGVVYKAKNKLTGEVVALKKIRLDT-ETEGVPSTAIREISLLKELNHPNIV 64          
BLAST of CX296334 vs. ExPASy Swiss-Prot
Match: CDK2_MOUSE (Cell division protein kinase 2 OS=Mus musculus GN=Cdk2 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.521e-11
Identity = 34/62 (54.84%), Postives = 49/62 (79.03%), Query Frame = 1
Query:  172 FEKLDKIGQGTYSNVYKARDLLTGKIVALKKVRFDNLEPESVKFMA-REILVLRKLDHPNVI 354
            F+K++KIG+GTY  VYKA++ LTG++VALKK+R D  E E V   A REI +L++L+HPN++
Sbjct:    4 FQKVEKIGEGTYGVVYKAKNKLTGEVVALKKIRLDT-ETEGVPSTAIREISLLKELNHPNIV 64          
BLAST of CX296334 vs. ExPASy Swiss-Prot
Match: CDK2_MESAU (Cell division protein kinase 2 OS=Mesocricetus auratus GN=CDK2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.521e-11
Identity = 34/62 (54.84%), Postives = 49/62 (79.03%), Query Frame = 1
Query:  172 FEKLDKIGQGTYSNVYKARDLLTGKIVALKKVRFDNLEPESVKFMA-REILVLRKLDHPNVI 354
            F+K++KIG+GTY  VYKA++ LTG++VALKK+R D  E E V   A REI +L++L+HPN++
Sbjct:    4 FQKVEKIGEGTYGVVYKAKNKLTGEVVALKKIRLDT-ETEGVPSTAIREISLLKELNHPNIV 64          
The following BLAST results are available for this feature:
BLAST of CX296334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
Y1461_ARATH2.108e-3760.17Probable serine/threonine-protein kinase At1g54610... [more]
CDKC2_ARATH8.067e-1354.29Cyclin-dependent kinase C-2 OS=Arabidopsis thalian... [more]
CDKC1_ARATH8.067e-1354.29Cyclin-dependent kinase C-1 OS=Arabidopsis thalian... [more]
CDKC1_ORYSJ6.829e-1252.00Cyclin-dependent kinase C-1 OS=Oryza sativa subsp.... [more]
CDK3_MOUSE6.829e-1256.25Cell division protein kinase 3 OS=Mus musculus GN=... [more]
CDK2_HUMAN6.829e-1256.45Cell division protein kinase 2 OS=Homo sapiens GN=... [more]
CDKC2_ORYSJ8.919e-1250.67Cyclin-dependent kinase C-2 OS=Oryza sativa subsp.... [more]
CDK2_RAT1.521e-1154.84Cell division protein kinase 2 OS=Rattus norvegicu... [more]
CDK2_MOUSE1.521e-1154.84Cell division protein kinase 2 OS=Mus musculus GN=... [more]
CDK2_MESAU1.521e-1154.84Cell division protein kinase 2 OS=Mesocricetus aur... [more]

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Properties
Property NameValue
Genbank descriptionC05139A06SK FerrChloL1 Citrus clementina cDNA clone C05139A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296334 ID=CX296334; Name=CX296334; organism=Citrus clementina; type=EST; length=355bp
GAGGAGGAGCGTGCGAGAGCTGAGACGGAAAAGAACAGACGACACACCGG
TGATTTCGGCCCGCCGGAGAGACGCCGGCCTCACTCCGAGAGCCAGCAAG
GGTGGCCGTCGTGGCTCATGGCCGTCGCCGGCGACGCCATACGTGATTGG
ACCCCGCGCCGGGCTAACACTTTCGAAAAACTCGATAAAATTGGGCAAGG
GACGTACAGTAATGTGTACAAAGCTCGTGATCTTTTGACGGGAAAAATAG
TGGCGTTAAAGAAAGTTAGATTTGATAATTTGGAGCCAGAGAGTGTTAAG
TTTATGGCAAGGGAGATTCTTGTATTGAGAAAGCTTGATCATCCAAATGT
GATTA
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