CX296344

Overview
NameCX296344
Unique NameCX296344
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296344_ssr332 microsatellite CX296344_ssr332:332..343. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX296344 vs. ExPASy Swiss-Prot
Match: SUDA_EMENI (Chromosome segregation protein sudA OS=Emericella nidulans GN=sudA PE=2 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 1.663e-53
Identity = 110/224 (49.11%), Postives = 144/224 (64.29%), Query Frame = 3
Query:    3 YKRKGVKELLKMLHRCNEQLQQFSHVNKKALDQYVNFTXXXXXXXXXXAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMXXXXXXXXXXXXXXXPRESDVEGRVEKYIGVKVKVSFTGQGETQS-MKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADIANTQFITTTFRPELVKVADK 671
            YK      ++K LH+ NE L++++HVNKKA +QY NFT           ELDA  + I +LISVLD RKDE+IERTFK V+R F  +F +LV  G G L++                  E + +  VE Y+GV + VSF  + + Q  ++QLSGGQK++ AL L+FAIQ CDPAPFYLFDEIDA LD QYRTAV  M++ ++D  N QFI TTFRPE++ VA+K
Sbjct:  963 YKNTDSNTVVKKLHKVNEALKKYAHVNKKAFEQYNNFTKQRETLTSRREELDASQKSIDDLISVLDHRKDEAIERTFKQVSREFATIFEKLVPAGRGRLIIQRKTDRTQRAEDDLESEDE-EAKHSVENYVGVGISVSFNSKHDDQQRIQQLSGGQKSLCALALVFAIQACDPAPFYLFDEIDANLDAQYRTAVAQMLKTISDSTNGQFICTTFRPEMLHVAEK 1185          
BLAST of CX296344 vs. ExPASy Swiss-Prot
Match: SMC3_PONAB (Structural maintenance of chromosomes protein 3 OS=Pongo abelii GN=SMC3 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.251e-53
Identity = 116/231 (50.22%), Postives = 153/231 (66.23%), Query Frame = 3
Query:    3 YKRKGVKELLKMLHRCNEQLQQFSHVNKKALDQYVNFTXXXXXXXXXXAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMXXXXXXXXXXXXXXXPRESDVEG-------RVEKYIGVKVKVSFTG-QGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADIANTQFITTTFRPELVKVADK 671
            Y+   +K+L + L +CN +L+++SHVNKKALDQ+VNF+           ELD G + I EL++VL+ RK E+I+ TFK V+++F EVF +LV GG   LVM                  ES+           V+++ GV ++VSFTG QGE + M+QLSGGQK++VAL LIFAIQ+CDPAPFYLFDEID ALD Q+R AV +MI  LA   + QFITTTFRPEL++ ADK
Sbjct:  957 YQTLSLKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERGSGSQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELA--VHAQFITTTFRPELLESADK 1185          
BLAST of CX296344 vs. ExPASy Swiss-Prot
Match: SMC3_MOUSE (Structural maintenance of chromosomes protein 3 OS=Mus musculus GN=Smc3 PE=1 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 8.251e-53
Identity = 116/231 (50.22%), Postives = 153/231 (66.23%), Query Frame = 3
Query:    3 YKRKGVKELLKMLHRCNEQLQQFSHVNKKALDQYVNFTXXXXXXXXXXAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMXXXXXXXXXXXXXXXPRESDVEG-------RVEKYIGVKVKVSFTG-QGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADIANTQFITTTFRPELVKVADK 671
            Y+   +K+L + L +CN +L+++SHVNKKALDQ+VNF+           ELD G + I EL++VL+ RK E+I+ TFK V+++F EVF +LV GG   LVM                  ES+           V+++ GV ++VSFTG QGE + M+QLSGGQK++VAL LIFAIQ+CDPAPFYLFDEID ALD Q+R AV +MI  LA   + QFITTTFRPEL++ ADK
Sbjct:  957 YQTLSLKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERGSGSQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELA--VHAQFITTTFRPELLESADK 1185          
BLAST of CX296344 vs. ExPASy Swiss-Prot
Match: SMC3_HUMAN (Structural maintenance of chromosomes protein 3 OS=Homo sapiens GN=SMC3 PE=1 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 8.251e-53
Identity = 116/231 (50.22%), Postives = 153/231 (66.23%), Query Frame = 3
Query:    3 YKRKGVKELLKMLHRCNEQLQQFSHVNKKALDQYVNFTXXXXXXXXXXAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMXXXXXXXXXXXXXXXPRESDVEG-------RVEKYIGVKVKVSFTG-QGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADIANTQFITTTFRPELVKVADK 671
            Y+   +K+L + L +CN +L+++SHVNKKALDQ+VNF+           ELD G + I EL++VL+ RK E+I+ TFK V+++F EVF +LV GG   LVM                  ES+           V+++ GV ++VSFTG QGE + M+QLSGGQK++VAL LIFAIQ+CDPAPFYLFDEID ALD Q+R AV +MI  LA   + QFITTTFRPEL++ ADK
Sbjct:  957 YQTLSLKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERGSGSQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELA--VHAQFITTTFRPELLESADK 1185          
BLAST of CX296344 vs. ExPASy Swiss-Prot
Match: SMC3_RAT (Structural maintenance of chromosomes protein 3 OS=Rattus norvegicus GN=Smc3 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.095e-52
Identity = 115/231 (49.78%), Postives = 152/231 (65.80%), Query Frame = 3
Query:    3 YKRKGVKELLKMLHRCNEQLQQFSHVNKKALDQYVNFTXXXXXXXXXXAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMXXXXXXXXXXXXXXXPRESDVEG-------RVEKYIGVKVKVSFTG-QGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADIANTQFITTTFRPELVKVADK 671
            Y+   +K+L + L +CN +L+++SHVNKKALDQ+VNF+           ELD G + I EL++VL+ RK E+I+ TFK V+++F EVF +LV G    LVM                  ES+           V+++ GV ++VSFTG QGE + M+QLSGGQK++VAL LIFAIQ+CDPAPFYLFDEID ALD Q+R AV +MI  LA   + QFITTTFRPEL++ ADK
Sbjct:  957 YQTLSLKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRKYEAIQLTFKQVSKNFSEVFQKLVPGAKATLVMKKGDVEGSQSQDEGEGSGESERGSGSQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELA--VHAQFITTTFRPELLESADK 1185          
BLAST of CX296344 vs. ExPASy Swiss-Prot
Match: SMC3_BOVIN (Structural maintenance of chromosomes protein 3 OS=Bos taurus GN=SMC3 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 6.985e-52
Identity = 116/234 (49.57%), Postives = 154/234 (65.81%), Query Frame = 3
Query:    3 YKRKGVKELLKMLHRCNEQLQQFSHVNKKALDQYVNFTXXXXXXXXXXAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVM----------MXXXXXXXXXXXXXXXPRESDVEGRVEKYIGVKVKVSFTG-QGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADIANTQFITTTFRPELVKVADK 671
            Y+   +K+L + L +CN +L+++SHVNKKALDQ+VNF+           ELD G + I EL++VL+ RK E+I+ TFK V+++F EVF +LV GG   LVM          +               P+ S     V+++ GV ++VSFTG QGE + M+QLSGGQK++VAL LIFAIQ+CDPAPFYLFDEID ALD Q+R AV +MI  LA   + QFITTTFRPEL++ ADK
Sbjct:  957 YQTLSLKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKRRXERQSGLRMKEKGVVKGERGSGPQSS--VPSVDQFTGVGIRVSFTGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELA--VHAQFITTTFRPELLESADK 1186          
BLAST of CX296344 vs. ExPASy Swiss-Prot
Match: SMC3_XENLA (Structural maintenance of chromosomes protein 3 (Fragment) OS=Xenopus laevis GN=smc3 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.325e-47
Identity = 107/205 (52.20%), Postives = 139/205 (67.80%), Query Frame = 3
Query:   60 LQQFSHVNKKALDQYVNFTXXXXXXXXXXAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMXXXXXXXXXXXXXXXPRESDVEGRVEKYIGVKVKVSFTG-QGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADIANTQFITTTFRPELVKVADK 671
            L+++SHVNKKALDQ+VNF+           ELD G + I EL++VL+ RK E+I+ TFK V+++F EVF +LV GG   LVM                  +S V    +++ GV ++VSFTG Q E + M+QLS GQK++VAL LIFAIQ+CDPAPFYLFDEID ALD Q+R AV +MI  LA  ++ QFITTTFRPEL++ ADK
Sbjct:    1 LKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGHKSIMELMNVLELRKYEAIQLTFKQVSKNFSEVFQKLVPGGRPLLVMKKGDVEGSQSQDEGEGSAQSSVPS-FDQFTGVGIRVSFTGKQAEMREMQQLSRGQKSLVALRLIFAIQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELA--SHAQFITTTFRPELLESADK 202          
BLAST of CX296344 vs. ExPASy Swiss-Prot
Match: SMC3_SCHPO (Structural maintenance of chromosomes protein 3 OS=Schizosaccharomyces pombe GN=psm3 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.968e-46
Identity = 101/216 (46.76%), Postives = 136/216 (62.96%), Query Frame = 3
Query:   27 LLKMLHRCNEQLQQFSHVNKKALDQYVNFTXXXXXXXXXXAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMXXXXXXXXXXXXXXXPRES-DVEGRVEKYIGVKVKVSFTGQGETQ-SMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADIANTQFITTTFRPELVKVAD 668
            ++K LH+ NE L+ +  VNKKA +Q+ NFT           EL    E I EL +VLDQRKDE+IERTFK VA+ F E+F +LV  G G LVM                  ++   +  ++ Y G+ ++VSF  + + Q ++ QLSGGQK++ ALTLIFAIQRCDPAPF + DE DA LD QYR+A+  M++ ++    +QFI TTFRPE+VKVAD
Sbjct:  953 IVKKLHKINEALKDYGSVNKKAYEQFNNFTKQRDSLLARREELRRSQESISELTTVLDQRKDEAIERTFKQVAKSFSEIFVKLVPAGRGELVMNRRSELSQSIEQDISMDIDTPSQKSSIDNYTGISIRVSFNSKDDEQLNINQLSGGQKSLCALTLIFAIQRCDPAPFNILDECDANLDAQYRSAIAAMVKEMS--KTSQFICTTFRPEMVKVAD 1166          
BLAST of CX296344 vs. ExPASy Swiss-Prot
Match: SMC3_DICDI (Structural maintenance of chromosome protein 3 OS=Dictyostelium discoideum GN=smc3 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.596e-40
Identity = 96/222 (43.24%), Postives = 128/222 (57.66%), Query Frame = 3
Query:    6 KRKGVKELLKMLHRCNEQLQQFSHVNKKALDQYVNFTXXXXXXXXXXAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMXXXXXXXXXXXXXXXPRESDVEGRVEKYIGVKVKVSFTGQGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADIANTQFITTTFRPELVKVADK 671
            K+    + ++ L++ N+ L    HVN+KA DQ+ +FT           EL   +  I+ LI  LD +KDE+I RTF GVA++F +VF EL+ GG   LVM                  + +    +  + G+ ++VSF    E  SM+QLSGGQKT+VAL LIFA+QR DPAPFYL DEIDAALD  YR AV  MIR+ +     QFI TTF PE V  A++
Sbjct:  949 KKYNKDQSVEELNKINKSLASLRHVNQKANDQFNSFTNQYNSLEARRDELYESNASIQLLIKTLDNKKDEAIARTFSGVAKNFTQVFKELIPGGSAKLVMKRQMDEDEGEGEDPKEWADGETPKGLLTFTGIGIQVSFGEGHEPCSMRQLSGGQKTLVALALIFALQRTDPAPFYLLDEIDAALDHNYRVAVSKMIRKHS--REIQFIATTFGPEFVMDANQ 1168          
BLAST of CX296344 vs. ExPASy Swiss-Prot
Match: SMC3_YEAST (Structural maintenance of chromosomes protein 3 OS=Saccharomyces cerevisiae GN=SMC3 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.911e-33
Identity = 86/223 (38.57%), Postives = 125/223 (56.05%), Query Frame = 3
Query:   24 ELLKMLHRCNEQLQQFSHVNKKALDQYVNFTXXXXXXXXXXAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMXXXXXXXXXXXXXXXPRESDVE----GRVEK--YIGVKVKVSFTG-QGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADIANTQFITTTFRPELVKVADK 671
            +LL+ L+  N ++    +VNK+A + +  F           +ELD   + I++LI  L Q+K  +++ TF+ V+ +F  VF  LV  G   L++                  +++      G+  +  Y GV + VSF   Q E   ++QLSGGQKTV A+ LI AIQ  DPA FYLFDEIDAALD QYRTAV  +++ L+   N QFI TTFR ++++VADK
Sbjct:  976 QLLQRLNDMNTEISGLKNVNKRAFENFKKFNERRKDLAERASELDESKDSIQDLIVKLKQQKVNAVDSTFQKVSENFEAVFERLVPRGTAKLIIHRKNDNANDHDESIDVDMDAESNESQNGKDSEIMYTGVSISVSFNSKQNEQLHVEQLSGGQKTVCAIALILAIQMVDPASFYLFDEIDAALDKQYRTAVATLLKELS--KNAQFICTTFRTDMLQVADK 1196          
The following BLAST results are available for this feature:
BLAST of CX296344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
SUDA_EMENI1.663e-5349.11Chromosome segregation protein sudA OS=Emericella ... [more]
SMC3_PONAB8.251e-5350.22Structural maintenance of chromosomes protein 3 OS... [more]
SMC3_MOUSE8.251e-5350.22Structural maintenance of chromosomes protein 3 OS... [more]
SMC3_HUMAN8.251e-5350.22Structural maintenance of chromosomes protein 3 OS... [more]
SMC3_RAT4.095e-5249.78Structural maintenance of chromosomes protein 3 OS... [more]
SMC3_BOVIN6.985e-5249.57Structural maintenance of chromosomes protein 3 OS... [more]
SMC3_XENLA2.325e-4752.20Structural maintenance of chromosomes protein 3 (F... [more]
SMC3_SCHPO1.968e-4646.76Structural maintenance of chromosomes protein 3 OS... [more]
SMC3_DICDI3.596e-4043.24Structural maintenance of chromosome protein 3 OS=... [more]
SMC3_YEAST1.911e-3338.57Structural maintenance of chromosomes protein 3 OS... [more]

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Properties
Property NameValue
Genbank descriptionC05139C04SK FerrChloL1 Citrus clementina cDNA clone C05139C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296344 ID=CX296344; Name=CX296344; organism=Citrus clementina; type=EST; length=675bp
CATACAAGCGGAAAGGTGTCAAAGAACTGCTTAAAATGCTTCACAGGTGC
AATGAGCAACTGCAGCAGTTTAGCCATGTAAATAAGAAAGCACTTGACCA
ATATGTAAATTTTACAGAGCAGCGAGAAGAACTTCAGAGAAGGCAAGCTG
AACTGGATGCAGGTGATGAGAAAATTAAAGAACTTATATCAGTTTTAGAT
CAGCGGAAAGATGAATCGATAGAACGTACTTTCAAAGGTGTTGCTCGTCA
TTTTCGAGAAGTATTTTCTGAGCTTGTTCAAGGTGGCCATGGCCATCTAG
TTATGATGAAGAAAAAGGATGGTGATCATGGTGATGATGATGACGATGAC
GGACCTCGTGAATCTGATGTGGAAGGAAGGGTTGAGAAATATATTGGTGT
GAAAGTGAAGGTTTCCTTTACTGGGCAAGGGGAGACACAGTCAATGAAGC
AGTTATCTGGAGGTCAGAAAACTGTCGTGGCCCTGACGCTTATTTTTGCA
ATACAGCGATGTGATCCTGCACCATTTTATCTGTTTGATGAAATTGATGC
AGCACTGGATCCTCAGTATCGAACTGCTGTTGGAAATATGATTCGTCGTT
TGGCGGACATTGCAAATACTCAATTTATAACCACAACATTTCGTCCAGAG
CTTGTGAAAGTTGCTGACAAAATCT
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