CX296344
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296344 vs. ExPASy Swiss-Prot
Match: SUDA_EMENI (Chromosome segregation protein sudA OS=Emericella nidulans GN=sudA PE=2 SV=2) HSP 1 Score: 209.149 bits (531), Expect = 1.663e-53 Identity = 110/224 (49.11%), Postives = 144/224 (64.29%), Query Frame = 3 Query: 3 YKRKGVKELLKMLHRCNEQLQQFSHVNKKALDQYVNFTXXXXXXXXXXAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMXXXXXXXXXXXXXXXPRESDVEGRVEKYIGVKVKVSFTGQGETQS-MKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADIANTQFITTTFRPELVKVADK 671 YK ++K LH+ NE L++++HVNKKA +QY NFT ELDA + I +LISVLD RKDE+IERTFK V+R F +F +LV G G L++ E + + VE Y+GV + VSF + + Q ++QLSGGQK++ AL L+FAIQ CDPAPFYLFDEIDA LD QYRTAV M++ ++D N QFI TTFRPE++ VA+K Sbjct: 963 YKNTDSNTVVKKLHKVNEALKKYAHVNKKAFEQYNNFTKQRETLTSRREELDASQKSIDDLISVLDHRKDEAIERTFKQVSREFATIFEKLVPAGRGRLIIQRKTDRTQRAEDDLESEDE-EAKHSVENYVGVGISVSFNSKHDDQQRIQQLSGGQKSLCALALVFAIQACDPAPFYLFDEIDANLDAQYRTAVAQMLKTISDSTNGQFICTTFRPEMLHVAEK 1185
BLAST of CX296344 vs. ExPASy Swiss-Prot
Match: SMC3_PONAB (Structural maintenance of chromosomes protein 3 OS=Pongo abelii GN=SMC3 PE=2 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 8.251e-53 Identity = 116/231 (50.22%), Postives = 153/231 (66.23%), Query Frame = 3 Query: 3 YKRKGVKELLKMLHRCNEQLQQFSHVNKKALDQYVNFTXXXXXXXXXXAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMXXXXXXXXXXXXXXXPRESDVEG-------RVEKYIGVKVKVSFTG-QGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADIANTQFITTTFRPELVKVADK 671 Y+ +K+L + L +CN +L+++SHVNKKALDQ+VNF+ ELD G + I EL++VL+ RK E+I+ TFK V+++F EVF +LV GG LVM ES+ V+++ GV ++VSFTG QGE + M+QLSGGQK++VAL LIFAIQ+CDPAPFYLFDEID ALD Q+R AV +MI LA + QFITTTFRPEL++ ADK Sbjct: 957 YQTLSLKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERGSGSQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELA--VHAQFITTTFRPELLESADK 1185
BLAST of CX296344 vs. ExPASy Swiss-Prot
Match: SMC3_MOUSE (Structural maintenance of chromosomes protein 3 OS=Mus musculus GN=Smc3 PE=1 SV=2) HSP 1 Score: 206.838 bits (525), Expect = 8.251e-53 Identity = 116/231 (50.22%), Postives = 153/231 (66.23%), Query Frame = 3 Query: 3 YKRKGVKELLKMLHRCNEQLQQFSHVNKKALDQYVNFTXXXXXXXXXXAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMXXXXXXXXXXXXXXXPRESDVEG-------RVEKYIGVKVKVSFTG-QGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADIANTQFITTTFRPELVKVADK 671 Y+ +K+L + L +CN +L+++SHVNKKALDQ+VNF+ ELD G + I EL++VL+ RK E+I+ TFK V+++F EVF +LV GG LVM ES+ V+++ GV ++VSFTG QGE + M+QLSGGQK++VAL LIFAIQ+CDPAPFYLFDEID ALD Q+R AV +MI LA + QFITTTFRPEL++ ADK Sbjct: 957 YQTLSLKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERGSGSQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELA--VHAQFITTTFRPELLESADK 1185
BLAST of CX296344 vs. ExPASy Swiss-Prot
Match: SMC3_HUMAN (Structural maintenance of chromosomes protein 3 OS=Homo sapiens GN=SMC3 PE=1 SV=2) HSP 1 Score: 206.838 bits (525), Expect = 8.251e-53 Identity = 116/231 (50.22%), Postives = 153/231 (66.23%), Query Frame = 3 Query: 3 YKRKGVKELLKMLHRCNEQLQQFSHVNKKALDQYVNFTXXXXXXXXXXAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMXXXXXXXXXXXXXXXPRESDVEG-------RVEKYIGVKVKVSFTG-QGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADIANTQFITTTFRPELVKVADK 671 Y+ +K+L + L +CN +L+++SHVNKKALDQ+VNF+ ELD G + I EL++VL+ RK E+I+ TFK V+++F EVF +LV GG LVM ES+ V+++ GV ++VSFTG QGE + M+QLSGGQK++VAL LIFAIQ+CDPAPFYLFDEID ALD Q+R AV +MI LA + QFITTTFRPEL++ ADK Sbjct: 957 YQTLSLKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERGSGSQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELA--VHAQFITTTFRPELLESADK 1185
BLAST of CX296344 vs. ExPASy Swiss-Prot
Match: SMC3_RAT (Structural maintenance of chromosomes protein 3 OS=Rattus norvegicus GN=Smc3 PE=1 SV=1) HSP 1 Score: 204.527 bits (519), Expect = 4.095e-52 Identity = 115/231 (49.78%), Postives = 152/231 (65.80%), Query Frame = 3 Query: 3 YKRKGVKELLKMLHRCNEQLQQFSHVNKKALDQYVNFTXXXXXXXXXXAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMXXXXXXXXXXXXXXXPRESDVEG-------RVEKYIGVKVKVSFTG-QGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADIANTQFITTTFRPELVKVADK 671 Y+ +K+L + L +CN +L+++SHVNKKALDQ+VNF+ ELD G + I EL++VL+ RK E+I+ TFK V+++F EVF +LV G LVM ES+ V+++ GV ++VSFTG QGE + M+QLSGGQK++VAL LIFAIQ+CDPAPFYLFDEID ALD Q+R AV +MI LA + QFITTTFRPEL++ ADK Sbjct: 957 YQTLSLKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRKYEAIQLTFKQVSKNFSEVFQKLVPGAKATLVMKKGDVEGSQSQDEGEGSGESERGSGSQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELA--VHAQFITTTFRPELLESADK 1185
BLAST of CX296344 vs. ExPASy Swiss-Prot
Match: SMC3_BOVIN (Structural maintenance of chromosomes protein 3 OS=Bos taurus GN=SMC3 PE=1 SV=1) HSP 1 Score: 203.756 bits (517), Expect = 6.985e-52 Identity = 116/234 (49.57%), Postives = 154/234 (65.81%), Query Frame = 3 Query: 3 YKRKGVKELLKMLHRCNEQLQQFSHVNKKALDQYVNFTXXXXXXXXXXAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVM----------MXXXXXXXXXXXXXXXPRESDVEGRVEKYIGVKVKVSFTG-QGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADIANTQFITTTFRPELVKVADK 671 Y+ +K+L + L +CN +L+++SHVNKKALDQ+VNF+ ELD G + I EL++VL+ RK E+I+ TFK V+++F EVF +LV GG LVM + P+ S V+++ GV ++VSFTG QGE + M+QLSGGQK++VAL LIFAIQ+CDPAPFYLFDEID ALD Q+R AV +MI LA + QFITTTFRPEL++ ADK Sbjct: 957 YQTLSLKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKRRXERQSGLRMKEKGVVKGERGSGPQSS--VPSVDQFTGVGIRVSFTGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELA--VHAQFITTTFRPELLESADK 1186
BLAST of CX296344 vs. ExPASy Swiss-Prot
Match: SMC3_XENLA (Structural maintenance of chromosomes protein 3 (Fragment) OS=Xenopus laevis GN=smc3 PE=1 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 2.325e-47 Identity = 107/205 (52.20%), Postives = 139/205 (67.80%), Query Frame = 3 Query: 60 LQQFSHVNKKALDQYVNFTXXXXXXXXXXAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMXXXXXXXXXXXXXXXPRESDVEGRVEKYIGVKVKVSFTG-QGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADIANTQFITTTFRPELVKVADK 671 L+++SHVNKKALDQ+VNF+ ELD G + I EL++VL+ RK E+I+ TFK V+++F EVF +LV GG LVM +S V +++ GV ++VSFTG Q E + M+QLS GQK++VAL LIFAIQ+CDPAPFYLFDEID ALD Q+R AV +MI LA ++ QFITTTFRPEL++ ADK Sbjct: 1 LKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGHKSIMELMNVLELRKYEAIQLTFKQVSKNFSEVFQKLVPGGRPLLVMKKGDVEGSQSQDEGEGSAQSSVPS-FDQFTGVGIRVSFTGKQAEMREMQQLSRGQKSLVALRLIFAIQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELA--SHAQFITTTFRPELLESADK 202
BLAST of CX296344 vs. ExPASy Swiss-Prot
Match: SMC3_SCHPO (Structural maintenance of chromosomes protein 3 OS=Schizosaccharomyces pombe GN=psm3 PE=1 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 1.968e-46 Identity = 101/216 (46.76%), Postives = 136/216 (62.96%), Query Frame = 3 Query: 27 LLKMLHRCNEQLQQFSHVNKKALDQYVNFTXXXXXXXXXXAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMXXXXXXXXXXXXXXXPRES-DVEGRVEKYIGVKVKVSFTGQGETQ-SMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADIANTQFITTTFRPELVKVAD 668 ++K LH+ NE L+ + VNKKA +Q+ NFT EL E I EL +VLDQRKDE+IERTFK VA+ F E+F +LV G G LVM ++ + ++ Y G+ ++VSF + + Q ++ QLSGGQK++ ALTLIFAIQRCDPAPF + DE DA LD QYR+A+ M++ ++ +QFI TTFRPE+VKVAD Sbjct: 953 IVKKLHKINEALKDYGSVNKKAYEQFNNFTKQRDSLLARREELRRSQESISELTTVLDQRKDEAIERTFKQVAKSFSEIFVKLVPAGRGELVMNRRSELSQSIEQDISMDIDTPSQKSSIDNYTGISIRVSFNSKDDEQLNINQLSGGQKSLCALTLIFAIQRCDPAPFNILDECDANLDAQYRSAIAAMVKEMS--KTSQFICTTFRPEMVKVAD 1166
BLAST of CX296344 vs. ExPASy Swiss-Prot
Match: SMC3_DICDI (Structural maintenance of chromosome protein 3 OS=Dictyostelium discoideum GN=smc3 PE=3 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 3.596e-40 Identity = 96/222 (43.24%), Postives = 128/222 (57.66%), Query Frame = 3 Query: 6 KRKGVKELLKMLHRCNEQLQQFSHVNKKALDQYVNFTXXXXXXXXXXAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMXXXXXXXXXXXXXXXPRESDVEGRVEKYIGVKVKVSFTGQGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADIANTQFITTTFRPELVKVADK 671 K+ + ++ L++ N+ L HVN+KA DQ+ +FT EL + I+ LI LD +KDE+I RTF GVA++F +VF EL+ GG LVM + + + + G+ ++VSF E SM+QLSGGQKT+VAL LIFA+QR DPAPFYL DEIDAALD YR AV MIR+ + QFI TTF PE V A++ Sbjct: 949 KKYNKDQSVEELNKINKSLASLRHVNQKANDQFNSFTNQYNSLEARRDELYESNASIQLLIKTLDNKKDEAIARTFSGVAKNFTQVFKELIPGGSAKLVMKRQMDEDEGEGEDPKEWADGETPKGLLTFTGIGIQVSFGEGHEPCSMRQLSGGQKTLVALALIFALQRTDPAPFYLLDEIDAALDHNYRVAVSKMIRKHS--REIQFIATTFGPEFVMDANQ 1168
BLAST of CX296344 vs. ExPASy Swiss-Prot
Match: SMC3_YEAST (Structural maintenance of chromosomes protein 3 OS=Saccharomyces cerevisiae GN=SMC3 PE=1 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.911e-33 Identity = 86/223 (38.57%), Postives = 125/223 (56.05%), Query Frame = 3 Query: 24 ELLKMLHRCNEQLQQFSHVNKKALDQYVNFTXXXXXXXXXXAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMXXXXXXXXXXXXXXXPRESDVE----GRVEK--YIGVKVKVSFTG-QGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADIANTQFITTTFRPELVKVADK 671 +LL+ L+ N ++ +VNK+A + + F +ELD + I++LI L Q+K +++ TF+ V+ +F VF LV G L++ +++ G+ + Y GV + VSF Q E ++QLSGGQKTV A+ LI AIQ DPA FYLFDEIDAALD QYRTAV +++ L+ N QFI TTFR ++++VADK Sbjct: 976 QLLQRLNDMNTEISGLKNVNKRAFENFKKFNERRKDLAERASELDESKDSIQDLIVKLKQQKVNAVDSTFQKVSENFEAVFERLVPRGTAKLIIHRKNDNANDHDESIDVDMDAESNESQNGKDSEIMYTGVSISVSFNSKQNEQLHVEQLSGGQKTVCAIALILAIQMVDPASFYLFDEIDAALDKQYRTAVATLLKELS--KNAQFICTTFRTDMLQVADK 1196 The following BLAST results are available for this feature:
BLAST of CX296344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 25
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296344 ID=CX296344; Name=CX296344; organism=Citrus clementina; type=EST; length=675bpback to top |