CX296349

Overview
NameCX296349
Unique NameCX296349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1870 contig Ccv1_Contig1870:1..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296349 vs. ExPASy Swiss-Prot
Match: IVD_ARATH (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=IVD PE=1 SV=2)

HSP 1 Score: 305.449 bits (781), Expect = 1.705e-82
Identity = 150/199 (75.38%), Postives = 171/199 (85.93%), Query Frame = 2
Query:   77 ARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 673
            ARS+   +  K ++ S +  S+SLLFDDTQLQFKESV +FA++NIAP A +ID++NSFP+DVNLWKLMG FNLHGITAP+E          HCIAMEEISRASGSV LSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA++VDGGYI+NGNKMWCTNGP A+TLVVYAKTD KA
Sbjct:    7 ARSILG-YAVKTRRRSFSSRSSSLLFDDTQLQFKESVSKFAQDNIAPHAERIDKTNSFPKDVNLWKLMGEFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVALSYGAHSNLCINQLVRNGTAAQKEKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKAEKVDGGYILNGNKMWCTNGPSAETLVVYAKTDTKA 204          
BLAST of CX296349 vs. ExPASy Swiss-Prot
Match: IVD2_SOLTU (Isovaleryl-CoA dehydrogenase 2, mitochondrial (Fragment) OS=Solanum tuberosum GN=IVD2 PE=1 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 7.918e-80
Identity = 146/187 (78.07%), Postives = 159/187 (85.03%), Query Frame = 2
Query:  113 QKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 673
            QK   A  STSLLFDDTQ QFKESV QFA+ENIAP A KID++N FPQDVNLWKLMG+FNL GIT P+E          HCIAMEEISRASGSVGLSYGAH+NLCINQLVR+G+  QK KYLPKLISGEHVGALAMSEP+AGSDVV MKCKADRV+GGY++NGNKMWCTNGP AQTLVVYAKTD+ A
Sbjct:   10 QKPQFAAFSTSLLFDDTQKQFKESVAQFAQENIAPHAEKIDRTNYFPQDVNLWKLMGDFNLLGITVPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHTNLCINQLVRNGTHEQKQKYLPKLISGEHVGALAMSEPDAGSDVVSMKCKADRVEGGYVLNGNKMWCTNGPTAQTLVVYAKTDVTA 196          
BLAST of CX296349 vs. ExPASy Swiss-Prot
Match: IVD1_SOLTU (Isovaleryl-CoA dehydrogenase 1, mitochondrial OS=Solanum tuberosum GN=IVD1 PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 4.345e-78
Identity = 143/205 (69.76%), Postives = 166/205 (80.98%), Query Frame = 2
Query:   68 LLGARSLCASF---FTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 673
            L   RSL ++    F   Q   AAFS TSLL DDTQ QFKESV +FA+ENIAP A KID++NSFP+++NLWKLMG+FNLHGITAP+E          HCIA+EEISRASG+V +SYG  SN+CINQLVR+G+P QK KYLPKLISG+H+GALAMSEPNAGSDVV MKC+ADRVDGGY++NGNKMWCTNGPVA TL+VYAKTD  A
Sbjct:    4 LFAVRSLSSAIAKNFKSLQNQQAAFS-TSLLLDDTQKQFKESVAKFAQENIAPYAEKIDRTNSFPKEINLWKLMGDFNLHGITAPEEYGGLNLGYLYHCIALEEISRASGAVAVSYGVQSNVCINQLVRNGTPDQKQKYLPKLISGDHIGALAMSEPNAGSDVVSMKCRADRVDGGYVLNGNKMWCTNGPVANTLIVYAKTDTTA 207          
BLAST of CX296349 vs. ExPASy Swiss-Prot
Match: IVD_PONAB (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Pongo abelii GN=IVD PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.504e-54
Identity = 103/172 (59.88%), Postives = 129/172 (75.00%), Query Frame = 2
Query:  158 DTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 673
            + Q Q +++V +F +E++AP+A +ID+SN F      WK +GN  + GITAP +          H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A  L+VYAKTD+ A
Sbjct:   44 EEQRQLRQTVAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAA 215          
BLAST of CX296349 vs. ExPASy Swiss-Prot
Match: IVD_HUMAN (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=IVD PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.350e-54
Identity = 102/172 (59.30%), Postives = 129/172 (75.00%), Query Frame = 2
Query:  158 DTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 673
            + Q Q ++++ +F +E++AP+A +ID+SN F      WK +GN  + GITAP +          H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A  L+VYAKTD+ A
Sbjct:   44 EEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAA 215          
BLAST of CX296349 vs. ExPASy Swiss-Prot
Match: IVD_MOUSE (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Ivd PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.663e-53
Identity = 100/173 (57.80%), Postives = 128/173 (73.99%), Query Frame = 2
Query:  155 DDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 673
            ++ Q Q + ++ +F +EN+AP+A +IDQ+N F      WK +G+  + GITAP +          H + MEEISRASG+VGLSYGAHSNLC+NQ+VR+G+ AQK+KYLPKLISGE +GALAMSEPNAGSDVV MK KA++    Y++NGNK W TNGP A  LVVYAKTD+ A
Sbjct:   44 NEEQKQLRHTISKFLQENLAPKAQEIDQTNDFKNLREFWKQLGSLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCVNQIVRNGNEAQKEKYLPKLISGEFIGALAMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGPDADILVVYAKTDLTA 216          
BLAST of CX296349 vs. ExPASy Swiss-Prot
Match: IVD_RAT (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Ivd PE=1 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 3.704e-53
Identity = 100/173 (57.80%), Postives = 127/173 (73.41%), Query Frame = 2
Query:  155 DDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 673
            ++ Q Q + ++ +F +EN+AP+A +IDQSN F      WK +G+  + GITAP +          H + MEEISRAS +VGLSYGAHSNLCINQ+VR+G+ AQK+KYLPKLISGE +GALAMSEPNAGSDVV M+ KA++    Y++NGNK W TNGP A  LVVYAKTD+ A
Sbjct:   44 NEEQKQLRHTISKFVQENLAPKAQEIDQSNDFKNLREFWKQLGSLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASAAVGLSYGAHSNLCINQIVRNGNEAQKEKYLPKLISGEFIGALAMSEPNAGSDVVSMRLKAEKKGDHYVLNGNKFWITNGPDADVLVVYAKTDLTA 216          
BLAST of CX296349 vs. ExPASy Swiss-Prot
Match: IVD_BOVIN (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=IVD PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.837e-53
Identity = 100/173 (57.80%), Postives = 128/173 (73.99%), Query Frame = 2
Query:  155 DDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 673
            ++ Q Q +++V +F +E++AP+A +IDQSN F      WK +GN  + GITAP +          + + MEEISR SG+VGLSYGAHSNLCINQ+VR+G+  QK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++    Y++NGNK W TNGP A  LVVYAKTD+ A
Sbjct:   46 NEEQKQLRQTVAKFLQEHLAPQAQEIDQSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGFLENVLVMEEISRVSGAVGLSYGAHSNLCINQIVRNGNETQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGPDADVLVVYAKTDVTA 218          
BLAST of CX296349 vs. ExPASy Swiss-Prot
Match: ACDS_CLOAB (Acyl-CoA dehydrogenase, short-chain specific OS=Clostridium acetobutylicum GN=bcd PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.583e-26
Identity = 62/163 (38.04%), Postives = 96/163 (58.90%), Query Frame = 2
Query:  176 KESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 664
            ++ V +FA   + P AA+ID++  FP + N+ K MG + + GI   +E          + IA+EE+S+  G+ G+   AH++LC + +  HG+  QK KYL  L  GE +GA  ++EPNAG+D    +  A      Y+ING+K++ TNG VA T V++A TD
Sbjct:   13 RQMVREFAENEVKPIAAEIDETERFPME-NV-KKMGQYGMMGIPFSKEYGGAGGDVLSYIIAVEELSKVCGTTGVILSAHTSLCASLINEHGTEEQKQKYLVPLAKGEKIGAYGLTEPNAGTDSGAQQTVAVLEGDHYVINGSKIFITNGGVADTFVIFAMTD 173          
BLAST of CX296349 vs. ExPASy Swiss-Prot
Match: ACDC_BACSU (Probable acyl-CoA dehydrogenase yngJ OS=Bacillus subtilis GN=yngJ PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.123e-25
Identity = 65/166 (39.16%), Postives = 90/166 (54.22%), Query Frame = 2
Query:  164 QLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 661
            Q   +E V  FA++ IAP A  +DQ+  FP     +K MG   L GI  P+E          + +A+EE+ +A GS GLSY A  +L  + L   G+  QK  +L  L SG  +G+  ++EPNAGSD  G + KA      Y+ING K W TN   A+T++V A T
Sbjct:    9 QQMVREMVKDFAKKEIAPHAEHVDQTGEFPMQT--FKKMGELGLMGIPFPEEYGGSGGDTISYALAVEEVGKACGSTGLSYAAAVSLGASPLYYFGTEEQKQTHLTPLASGTALGSFGLTEPNAGSDAGGTQTKAISNGDEYVINGEKCWITNASYARTVIVTAVT 172          
The following BLAST results are available for this feature:
BLAST of CX296349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
IVD_ARATH1.705e-8275.38Isovaleryl-CoA dehydrogenase, mitochondrial OS=Ara... [more]
IVD2_SOLTU7.918e-8078.07Isovaleryl-CoA dehydrogenase 2, mitochondrial (Fra... [more]
IVD1_SOLTU4.345e-7869.76Isovaleryl-CoA dehydrogenase 1, mitochondrial OS=S... [more]
IVD_PONAB1.504e-5459.88Isovaleryl-CoA dehydrogenase, mitochondrial OS=Pon... [more]
IVD_HUMAN3.350e-5459.30Isovaleryl-CoA dehydrogenase, mitochondrial OS=Hom... [more]
IVD_MOUSE1.663e-5357.80Isovaleryl-CoA dehydrogenase, mitochondrial OS=Mus... [more]
IVD_RAT3.704e-5357.80Isovaleryl-CoA dehydrogenase, mitochondrial OS=Rat... [more]
IVD_BOVIN4.837e-5357.80Isovaleryl-CoA dehydrogenase, mitochondrial OS=Bos... [more]
ACDS_CLOAB6.583e-2638.04Acyl-CoA dehydrogenase, short-chain specific OS=Cl... [more]
ACDC_BACSU1.123e-2539.16Probable acyl-CoA dehydrogenase yngJ OS=Bacillus s... [more]

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Properties
Property NameValue
Genbank descriptionC05139D04SK FerrChloL1 Citrus clementina cDNA clone C05139D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296349 ID=CX296349; Name=CX296349; organism=Citrus clementina; type=EST; length=674bp
GACGAGGCCTCGTGCCGAATTCGGCACGAGGAAAAAGGGAAAAAGGTAAG
AGAGAAGAATGCAGAGGCTCTTGGGTGCACGGTCTCTCTGTGCTTCGTTC
TTTACGAAGAAGCAGAAACATTCGGCTGCTTTCTCCTCCACTTCTCTGCT
CTTTGATGACACTCAATTACAGTTTAAAGAAAGTGTGGGGCAATTTGCGC
GAGAAAACATTGCTCCTCGTGCGGCAAAAATTGACCAATCAAATTCGTTC
CCACAGGATGTTAATTTATGGAAACTCATGGGAAATTTCAATCTCCATGG
AATAACAGCTCCACAGGAATACGGAGGGCTTGGACTTGGTTACTTGTATC
ATTGCATAGCAATGGAAGAAATTAGCCGTGCGTCGGGGTCTGTTGGTCTC
TCTTACGGTGCCCATTCTAATTTGTGCATCAATCAATTGGTGAGACATGG
AAGCCCTGCTCAGAAAGACAAGTACTTGCCCAAGCTCATTAGCGGAGAAC
ATGTAGGTGCTCTTGCCATGAGTGAACCCAACGCTGGCTCTGATGTTGTT
GGCATGAAATGCAAAGCTGATCGCGTAGATGGGGGTTATATTATAAATGG
GAACAAGATGTGGTGCACCAATGGTCCAGTTGCTCAGACGTTGGTTGTTT
ACGCAAAAACAGACATTAAAGCTG
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