CX296351

Overview
NameCX296351
Unique NameCX296351
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length385
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig683 contig Ccv1_Contig683:16..400. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSPA_FLAPR (Glycine dehydrogenase [decarboxylating] A, mitochondrial OS=Flaveria pringlei GN=GDCSPA PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 2.817e-58
Identity = 108/118 (91.53%), Postives = 114/118 (96.61%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            LPSHPVV+TGGIPAPE+SQPLGTIAAAPWGSALILPISYTYIAMMGS+G+T ASKIAILNANYMAKRLE HYPILFRGVNGTVAHEFIVDLR LK TAGIEPEDVA+RL+DYGFHGPT
Sbjct:  799 LPSHPVVATGGIPAPEQSQPLGTIAAAPWGSALILPISYTYIAMMGSQGITNASKIAILNANYMAKRLENHYPILFRGVNGTVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPT 916
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP_FLATR (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria trinervia GN=GDCSPA PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 4.805e-58
Identity = 108/118 (91.53%), Postives = 113/118 (95.76%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            LPSHPVV TGGIPAPE+SQPLGTIAAAPWGSALILPISYTYIAMMGS+G+T ASKIAILNANYMAKRLE HYPILFRGVNGTVAHEFIVDLR LK TAGIEPEDVA+RL+DYGFHGPT
Sbjct:  796 LPSHPVVPTGGIPAPEQSQPLGTIAAAPWGSALILPISYTYIAMMGSQGITNASKIAILNANYMAKRLENHYPILFRGVNGTVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPT 913
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP_FLAAN (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria anomala GN=GDCSP PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 4.805e-58
Identity = 108/118 (91.53%), Postives = 113/118 (95.76%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            LPSHPVV TGGIPAPE+SQPLGTIAAAPWGSALILPISYTYIAMMGS+G+T ASKIAILNANYMAKRLE HYPILFRGVNGTVAHEFIVDLR LK TAGIEPEDVA+RL+DYGFHGPT
Sbjct:  796 LPSHPVVPTGGIPAPEESQPLGTIAAAPWGSALILPISYTYIAMMGSQGITNASKIAILNANYMAKRLENHYPILFRGVNGTVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPT 913
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSPB_FLAPR (Glycine dehydrogenase [decarboxylating] B, mitochondrial OS=Flaveria pringlei GN=GDCSPB PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 4.805e-58
Identity = 108/118 (91.53%), Postives = 113/118 (95.76%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            LPSHPVV TGGIPAPE+SQPLGTIAAAPWGSALILPISYTYIAMMGS+G+T ASKIAILNANYMAKRLE HYPILFRGVNGTVAHEFIVDLR LK TAGIEPEDVA+RL+DYGFHGPT
Sbjct:  796 LPSHPVVPTGGIPAPEQSQPLGTIAAAPWGSALILPISYTYIAMMGSQGITNASKIAILNANYMAKRLENHYPILFRGVNGTVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPT 913
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP2_ARATH (Glycine dehydrogenase [decarboxylating] 2, mitochondrial OS=Arabidopsis thaliana GN=At4g33010 PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 6.275e-58
Identity = 105/118 (88.98%), Postives = 112/118 (94.92%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            LPSHPV+ TGGIP PEK+ PLG I+AAPWGSALILPISYTYIAMMGS GLT+ASKIAILNANYMAKRLEKHYP+LFRGVNGTVAHEFI+DLRG KNTAGIEPEDVA+RLMDYGFHGPT
Sbjct:  800 LPSHPVIPTGGIPQPEKTAPLGAISAAPWGSALILPISYTYIAMMGSGGLTDASKIAILNANYMAKRLEKHYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPT 917
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP_SOLTU (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 8.196e-58
Identity = 104/118 (88.14%), Postives = 114/118 (96.61%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            LPSHPVV TGGIP+P+KS+PLG I+AAPWGSALILPISYTYIAMMGSKGLT+ASKIAIL+ANYMAKRLEKHYP+LFRGVNGT AHEFI+DLRG KNTAGIEPEDVA+RL+DYGFHGPT
Sbjct:  797 LPSHPVVPTGGIPSPDKSEPLGAISAAPWGSALILPISYTYIAMMGSKGLTDASKIAILSANYMAKRLEKHYPVLFRGVNGTCAHEFIIDLRGFKNTAGIEPEDVAKRLIDYGFHGPT 914
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP_PEA (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Pisum sativum GN=GDCSP PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 1.070e-57
Identity = 105/118 (88.98%), Postives = 113/118 (95.76%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            LPSHPVV TGGIPAPE  QPLG+I+AAPWGSALILPISYTYIAMMGS+GLT+ASKIAILNANYMAKRLE +YP+LFRGVNGTVAHEFI+DLRG KNTAGIEPEDVA+RLMDYGFHGPT
Sbjct:  818 LPSHPVVPTGGIPAPENPQPLGSISAAPWGSALILPISYTYIAMMGSQGLTDASKIAILNANYMAKRLESYYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPT 935
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP1_ARATH (Glycine dehydrogenase [decarboxylating] 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSP PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 1.398e-57
Identity = 104/118 (88.14%), Postives = 112/118 (94.92%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            LPSHPV+ TGGIP PE++ PLGTI+AAPWGSALILPISYTYIAMMGS GLT+ASKIAILNANYMAKRLE HYP+LFRGVNGTVAHEFI+DLRG KNTAGIEPEDVA+RLMDYGFHGPT
Sbjct:  806 LPSHPVIPTGGIPEPEQTSPLGTISAAPWGSALILPISYTYIAMMGSGGLTDASKIAILNANYMAKRLESHYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPT 923
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP_MOUSE (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Mus musculus GN=Gldc PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.524e-39
Identity = 78/118 (66.10%), Postives = 92/118 (77.97%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            LPSHPV+S   I   E + P+GT++AAPWGS+ ILPIS+ YI MMG KGL EA++IAILNANYMAKRLEKHY +LFRG  G VAHEFI+D R  K +A +E  DVA+RL DYGFH PT
Sbjct:  785 LPSHPVIS---IKPTEGTWPVGTVSAAPWGSSSILPISWAYIKMMGGKGLKEATEIAILNANYMAKRLEKHYRVLFRGARGYVAHEFILDTRPFKKSANVEAVDVAKRLQDYGFHAPT 899
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP_CHICK (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Gallus gallus GN=GLDC PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 2.479e-38
Identity = 78/118 (66.10%), Postives = 91/118 (77.12%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            LP+HPV+    I   + + PLGT++AAPWGS+ ILPIS+ YI  MG+KGL  AS+IAILNANYMAKRLEKHY ILFRGV G VAHEFI+D R  K TA IE  D+A+RL DYGFH PT
Sbjct:  764 LPTHPVIK---IQTDKDACPLGTVSAAPWGSSAILPISWVYIKTMGAKGLKHASEIAILNANYMAKRLEKHYKILFRGVRGYVAHEFILDTRPFKKTANIEAVDLAKRLQDYGFHAPT 878
The following BLAST results are available for this feature:
BLAST of CX296351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
GCSPA_FLAPR2.817e-5891.53Glycine dehydrogenase [decarboxylating] A, mitocho... [more]
GCSP_FLATR4.805e-5891.53Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_FLAAN4.805e-5891.53Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSPB_FLAPR4.805e-5891.53Glycine dehydrogenase [decarboxylating] B, mitocho... [more]
GCSP2_ARATH6.275e-5888.98Glycine dehydrogenase [decarboxylating] 2, mitocho... [more]
GCSP_SOLTU8.196e-5888.14Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_PEA1.070e-5788.98Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP1_ARATH1.398e-5788.14Glycine dehydrogenase [decarboxylating] 1, mitocho... [more]
GCSP_MOUSE6.524e-3966.10Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_CHICK2.479e-3866.10Glycine dehydrogenase [decarboxylating], mitochond... [more]

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Properties
Property NameValue
Genbank descriptionC05139D09SK FerrChloL1 Citrus clementina cDNA clone C05139D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296351 ID=CX296351; Name=CX296351; organism=Citrus clementina; type=EST; length=385bp
CTGCCTTCACATCCTGTGGTATCCACAGGTGGTATTCCTGCCCCTGAAAA
GTCTCAACCCCTGGGCACAATTGCAGCTGCACCCTGGGGCTCTGCACTTA
TCCTGCCAATATCATATACGTACATAGCTATGATGGGTTCTAAAGGACTC
ACTGAGGCTTCAAAGATAGCTATTCTGAATGCAAACTACATGGCAAAACG
TTTGGAGAAACATTACCCCATCCTTTTCCGTGGTGTCAATGGAACAGTTG
CTCATGAATTCATTGTGGACTTAAGAGGCTTGAAGAATACTGCCGGGATA
GAGCCCGAAGATGTTGCCCAACGTCTTATGGATTATGGATTCCATGGACC
CACATGTCATGGCCTGTTCAGGCACACTTATGATT
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