CX296363

Overview
NameCX296363
Unique NameCX296363
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7625 contig Ccv1_Contig7625:318..1013. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296363 vs. ExPASy Swiss-Prot
Match: PSBY_ARATH (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana GN=PSBY PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.162e-18
Identity = 59/159 (37.11%), Postives = 75/159 (47.17%), Query Frame = 3
Query:  207 SPLSMQNLPKGLTVSSKPT----DSSSLAAGTAIAGAIFSTLSSCDXXXXXXXXXXXXXG----DNRGXXXXXXXXXXXXWVLFNILQPALNQINRMRSTKGVIIXXXXXXXXXXXXMSMPPHXXXXXXXXXXXXXXXXDSRGQLLLIVVTPAILWVLY 659
            SP  +QN  K     S PT    + S     TA+AGA+FS+LS  +                  DNRG            WVL+NILQPA+NQ+N+MR +KG+++            +  PP                 DSRGQLLLIVVTPA+LWVLY
Sbjct:   17 SPPKLQNQTKSKPFISLPTPPKPNVSLAVTSTALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRESKGIVVGLGIGGGLAASGLLTPP---PEAYAAAEAAAASSDSRGQLLLIVVTPALLWVLY 172          
BLAST of CX296363 vs. ExPASy Swiss-Prot
Match: PSBY_SPIOL (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea GN=PSBY PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 64/180 (35.56%), Postives = 78/180 (43.33%), Query Frame = 3
Query:  135 VLNAKCFXXXXXXXXXXXGATKPTS-PLSMQNLPKGLTVSSKPTDSSSLAAGTAIAGAIFSTLSSCDXXXXXXXXXXXXX----GDNRGXXXXXXXXXXXXWVLFNILQPALNQINRMRSTKGVIIXXXXXXXXXXXXMSMPPHXXXXXXXXXXXXXXXXDSRGQLLLIVVTPAILWVLY 659
            VLN KC             + KPTS P+S+   P GL+ S  P   S +    AIAGA+F+TL S D                  DNRG            WVLFNILQPALNQIN+MR+ K   I            + +                   D+RG LLL+VV PAI WVL+
Sbjct:   11 VLNTKCLTLNTNKTTST--SPKPTSKPISLS--PLGLSNSKLPMGLSPIITAPAIAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQINKMRNEKKAFIVGLGLSGLATSGLLLAT---PEAQAASEEIARGSDNRGTLLLLVVLPAIGWVLF 183          
The following BLAST results are available for this feature:
BLAST of CX296363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PSBY_ARATH9.162e-1837.11Photosystem II core complex proteins psbY, chlorop... [more]
PSBY_SPIOL4.256e-1535.56Photosystem II core complex proteins psbY, chlorop... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05139F07SK FerrChloL1 Citrus clementina cDNA clone C05139F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296363 ID=CX296363; Name=CX296363; organism=Citrus clementina; type=EST; length=695bp
TATTTCCATTTCTTTCCCGTAGAGAGTAACCACATAGCCTCTACTGACGA
TCTTGCTTGATTATCGAACACTAGGCCTTAAACAAGAATCATCAATCATC
AACATCAATGGCAGCAGCAATGGCTACAACGGCTGTGCTCAATGCCAAGT
GCTTCAGCATCAGCTCCCCCAAAAGCAGCATCAAGCCTGGAGCCACAAAA
CCCACTTCCCCGCTCTCCATGCAAAACCTCCCAAAAGGCCTCACGGTCTC
ATCAAAACCAACCGATTCATCATCACTAGCAGCCGGCACCGCCATTGCCG
GAGCAATCTTCTCAACTCTGAGCTCATGCGATGCTGCTTTTGCCGCACAA
CAAATAGCAGAAATAGCGGAAGGTGACAACCGAGGGTTAGCACTATTGCT
CCCAATCATCCCGGCCATAGCCTGGGTGCTGTTCAACATTCTGCAGCCAG
CACTCAACCAAATCAACCGCATGCGCAGCACCAAGGGTGTGATCATTGGG
CTCGGGCTTGGTGGGTTGGCCGCAACAGGGCTGATGTCTATGCCACCCCA
TGCATCGGCTGCGGCCAGTGAAGTTGCCACGATTGCTGAAGCCGCTAGTG
ACAGCAGGGGTCAGCTTCTGCTTATTGTTGTTACTCCTGCTATTCTCTGG
GTGCTTTACACATTTTGCAGCCGGCTCTGAACCAATCACAGGATG
back to top