CX296368

Overview
NameCX296368
Unique NameCX296368
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length582
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10576 contig Ccv1_Contig10576:437..1018. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296368 vs. ExPASy Swiss-Prot
Match: NAC2_ARATH (NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.202e-40
Identity = 100/184 (54.35%), Postives = 116/184 (63.04%), Query Frame = 3
Query:    6 PKTLGIKKALVFYAGKAPKGIKTNWIMHEYRPANVHRS-PATKNNLRLDDWVLCRLYNKKGRMEKHYPSDQKSIGFPELEEDRKPNINISRQEVALGMPPHQGSPAPMMNDLLHMDTSDSVPRLQ-TDSSCSEHVLSPEITCDKEVQSMPKWNDLGNALNDDYN--QFNFNYMDTNSFQDDPFG 545
            PK +GIKKALVFYAGKAPKG KTNWIMHEYR A+V RS    KN+LRLDDWVLCR+YNKKG  E+  P      G   +EE  KP +     E+ +  PP Q S      +  + DTSDSVP+L  TDSSCSE V+SPE T   EVQS PKW D     ND+ N   F FNY+D     D+ FG
Sbjct:  100 PKPVGIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSVRKKKNSLRLDDWVLCRIYNKKGATERRGPPPPVVYGDEIMEE--KPKVT----EMVMPPPPQQTS------EFAYFDTSDSVPKLHTTDSSCSEQVVSPEFT--SEVQSEPKWKDWSAVSNDNNNTLDFGFNYIDAT--VDNAFG 267          
BLAST of CX296368 vs. ExPASy Swiss-Prot
Match: NA102_ARATH (NAC domain-containing protein 102 OS=Arabidopsis thaliana GN=NAC102 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.797e-36
Identity = 93/194 (47.94%), Postives = 109/194 (56.19%), Query Frame = 3
Query:    3 KPKTLGIKKALVFYAGKAPKGIKTNWIMHEYRPANVHRSPAT--KNNLRLDDWVLCRLYNKKGRMEKHYPSDQKSIGFPELEEDRKPNINISRQEVALGMPPHQGSPAPMMNDLLHMDTSDSVPRLQTDSSCSEHVLSPEITCDK--EVQSMPKWNDLGNAL---NDDYNQFNFNYMDTNSFQDDPFGPAVQYQ 563
            KPKTLGIKKALVFYAGKAPKGIKTNWIMHEYR ANV RS +T  KNNLRLDDWVLCR+YNKKG MEK+ P+  +           KP   +S                                   +DS CS HV+SP++TC    EV+S PKW +L +AL   NDD + F+         Q+D F P  QYQ
Sbjct:  142 KPKTLGIKKALVFYAGKAPKGIKTNWIMHEYRLANVDRSASTNKKNNLRLDDWVLCRIYNKKGTMEKYLPAAAE-----------KPTEKMS----------------------------------TSDSRCSSHVISPDVTCSDNWEVESEPKWINLEDALEAFNDDTSMFS----SIGLLQNDAFVPQFQYQ 286          
BLAST of CX296368 vs. ExPASy Swiss-Prot
Match: NAC48_ORYSJ (NAC domain-containing protein 48 OS=Oryza sativa subsp. japonica GN=NAC48 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.682e-34
Identity = 85/155 (54.84%), Postives = 98/155 (63.23%), Query Frame = 3
Query:    6 PKTLGIKKALVFYAGKAPKGIKTNWIMHEYRPANVHRSPATKNNLRLDDWVLCRLYNKKGRMEKHYPSDQKSIGFPEL--EEDRKPNINISRQEVALGMPPHQGS--PAPMMNDL--LHMDTSDSVPRLQTDSSCSEHVLSPEITCDKEVQSMPK 452
            PK + IKKALVFYAGKAPKG KTNWIMHEYR A+V RS   KN+LRLDDWVLCR+YNKKG +EK   +   + G         RKP + ++    A+  PP Q      P   DL   +   SDS+PRL  DSSCSE VLSPE  C  EVQS PK
Sbjct:  102 PKPVAIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSARKKNSLRLDDWVLCRIYNKKGGLEKPPAAAVAAAGMVSSGGGVQRKPMVGVN---AAVSSPPEQKPVVAGPAFPDLAAYYDRPSDSMPRLHADSSCSEQVLSPEFAC--EVQSQPK 251          
BLAST of CX296368 vs. ExPASy Swiss-Prot
Match: NAC71_ORYSJ (NAC domain-containing protein 71 OS=Oryza sativa subsp. japonica GN=NAC71 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.434e-25
Identity = 77/168 (45.83%), Postives = 92/168 (54.76%), Query Frame = 3
Query:    6 PKTLGIKKALVFYAGKAPKGIKTNWIMHEYRPANVHRSPATK-------NNLRLDDWVLCRLYNKKGRMEKHYPSDQKSIGFPELEEDRKPNINISRQEVALGMPPHQGSPAPMM---------------NDLLHMDTS-----DSVPRLQTDSSCSEHVLSPEITCD 428
            P+ + IKKALVFYAGK PKG+KTNWIMHEYR A+V RS A +       N LRLDDWVLCR+YNKKG +E++   D          ED KP    +    A G     G  A  M               +++L  D S     DS+PRL TDSS SEHVLSP  + D
Sbjct:  102 PRAVAIKKALVFYAGKPPKGVKTNWIMHEYRLADVDRSAAARKLSKSSHNALRLDDWVLCRIYNKKGVIERYDTVD--------AGEDVKP---AAAAAAAKGGRIGGGGGAAAMKVELSDYGFYDQEPESEMLCFDRSGSADRDSMPRLHTDSSGSEHVLSPSPSPD 258          
BLAST of CX296368 vs. ExPASy Swiss-Prot
Match: NAC68_ORYSJ (NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.584e-19
Identity = 42/64 (65.62%), Postives = 53/64 (82.81%), Query Frame = 3
Query:    9 KTLGIKKALVFYAGKAPKGIKTNWIMHEYRPANVHRSP-ATKNNLRLDDWVLCRLYNKKGRMEK 197
            +T+GIKKALVFY+GKAP+G+KT+WIMHEYR A+  R+P   K + +LD+WVLCRLYNKK   EK
Sbjct:  118 RTVGIKKALVFYSGKAPRGVKTDWIMHEYRLADADRAPGGKKGSQKLDEWVLCRLYNKKNNWEK 181          
BLAST of CX296368 vs. ExPASy Swiss-Prot
Match: NAC67_ORYSJ (NAC domain-containing protein 67 OS=Oryza sativa subsp. japonica GN=NAC67 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.697e-16
Identity = 42/65 (64.62%), Postives = 46/65 (70.77%), Query Frame = 3
Query:    9 KTLGIKKALVFYAGKAPKGIKTNWIMHEYRPANVHRSPAT--KNNLRLDDWVLCRLYNKKGRMEK 197
            +T GIKKALVFY GK P+G+KT WIMHEYR A    + A      LRLDDWVLCRLYNKK   EK
Sbjct:  112 RTAGIKKALVFYHGKPPRGVKTEWIMHEYRLAKKGGAAAAAGAGALRLDDWVLCRLYNKKNEWEK 176          
BLAST of CX296368 vs. ExPASy Swiss-Prot
Match: NAC18_ARATH (NAC domain-containing protein 18 OS=Arabidopsis thaliana GN=NAC018 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.982e-15
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 3
Query:    9 KTLGIKKALVFYAGKAPKGIKTNWIMHEYR-----PANVHRSPATKNNLRLDDWVLCRLYNK 179
            K +G+KKALVFY+GK PKG+K++WIMHEYR     P ++      KN+LRLDDWVLCR+Y K
Sbjct:  116 KKVGVKKALVFYSGKPPKGVKSDWIMHEYRLTDNKPTHICDFGNKKNSLRLDDWVLCRIYKK 177          
BLAST of CX296368 vs. ExPASy Swiss-Prot
Match: NAC72_ARATH (NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.133e-14
Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 3
Query:    9 KTLGIKKALVFYAGKAPKGIKTNWIMHEYRPANVHRSPATKNNLRLDDWVLCRLYNK 179
            + +GIKKALVFYAGKAPKG KTNWIMHEYR     RS  +    +LDDWVLCR+Y K
Sbjct:  109 RRVGIKKALVFYAGKAPKGTKTNWIMHEYRLIEHSRSHGSS---KLDDWVLCRIYKK 162          
BLAST of CX296368 vs. ExPASy Swiss-Prot
Match: NAC29_ARATH (NAC domain-containing protein 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.133e-14
Identity = 34/58 (58.62%), Postives = 47/58 (81.03%), Query Frame = 3
Query:   15 LGIKKALVFYAGKAPKGIKTNWIMHEYRPANVHRSPATKN-NLRLDDWVLCRLYNKKG 185
            +G+KKALVFY G+ PKGIKT+WIMHEYR  +  ++   +N ++RLD+WVLCR+Y K+G
Sbjct:  106 VGVKKALVFYKGRPPKGIKTDWIMHEYRLHDSRKASTKRNGSMRLDEWVLCRIYKKRG 163          
BLAST of CX296368 vs. ExPASy Swiss-Prot
Match: NAC19_ARATH (NAC domain-containing protein 19 OS=Arabidopsis thaliana GN=NAC019 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.933e-14
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 3
Query:   15 LGIKKALVFYAGKAPKGIKTNWIMHEYRPANVHRSPATKN-NLRLDDWVLCRLYNKKGRMEK 197
            +GIKKALVFY GKAPKG KTNWIMHEYR       P+ +N + +LDDWVLCR+Y K+   +K
Sbjct:  111 VGIKKALVFYIGKAPKGTKTNWIMHEYRLI----EPSRRNGSTKLDDWVLCRIYKKQSSAQK 168          
The following BLAST results are available for this feature:
BLAST of CX296368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
NAC2_ARATH1.202e-4054.35NAC domain-containing protein 2 OS=Arabidopsis tha... [more]
NA102_ARATH1.797e-3647.94NAC domain-containing protein 102 OS=Arabidopsis t... [more]
NAC48_ORYSJ1.682e-3454.84NAC domain-containing protein 48 OS=Oryza sativa s... [more]
NAC71_ORYSJ2.434e-2545.83NAC domain-containing protein 71 OS=Oryza sativa s... [more]
NAC68_ORYSJ7.584e-1965.63NAC domain-containing protein 68 OS=Oryza sativa s... [more]
NAC67_ORYSJ2.697e-1664.62NAC domain-containing protein 67 OS=Oryza sativa s... [more]
NAC18_ARATH2.982e-1559.68NAC domain-containing protein 18 OS=Arabidopsis th... [more]
NAC72_ARATH1.133e-1466.67NAC domain-containing protein 72 OS=Arabidopsis th... [more]
NAC29_ARATH1.133e-1458.62NAC domain-containing protein 29 OS=Arabidopsis th... [more]
NAC19_ARATH1.933e-1461.29NAC domain-containing protein 19 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionC05139G01SK FerrChloL1 Citrus clementina cDNA clone C05139G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296368 ID=CX296368; Name=CX296368; organism=Citrus clementina; type=EST; length=582bp
GGAAGCCGAAGACTCTTGGTATAAAAAAGGCGCTTGTGTTCTACGCTGGA
AAAGCGCCTAAAGGAATCAAAACTAATTGGATTATGCATGAATATCGCCC
TGCTAATGTTCACAGATCCCCCGCCACCAAAAACAACCTAAGGCTTGACG
ATTGGGTATTATGTCGATTGTACAACAAGAAGGGGAGGATGGAAAAACAT
TACCCCAGCGATCAAAAATCAATTGGATTCCCAGAACTGGAGGAGGATCG
GAAACCAAATATTAACATTTCACGTCAAGAGGTAGCATTAGGAATGCCTC
CACATCAGGGATCGCCTGCGCCAATGATGAATGACCTATTACATATGGAT
ACGTCGGACTCGGTGCCCCGGTTGCAGACGGATTCGAGTTGCTCCGAGCA
CGTGTTGTCGCCGGAGATCACGTGCGATAAGGAGGTCCAAAGTATGCCCA
AATGGAATGATCTAGGCAATGCCTTGAATGATGATTATAATCAGTTCAAT
TTCAACTACATGGACACTAATAGCTTCCAAGACGACCCTTTTGGCCCCGC
AGTTCAGTATCAGATGGATCAGTTATCACCCT
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