CX296396

Overview
NameCX296396
Unique NameCX296396
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296396 vs. ExPASy Swiss-Prot
Match: CYSK_CITLA (Cysteine synthase OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.186e-60
Identity = 118/139 (84.89%), Postives = 125/139 (89.93%), Query Frame = -1
Query:  284 GTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAESMVFEP 700
            GTVTGAGKYLKE NP IKLYGVEPVESA+LSGGKPGPHKIQGIGAGFIPGVLDVNLLDE +Q+SSEE+IETAKLLALKEGLLVGISSG         AKRPENAGKLIV VFPSFGERYLS+VLFESVK+E E+MVFEP
Sbjct:  187 GTVTGAGKYLKEQNPNIKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPGVLDVNLLDEVIQVSSEESIETAKLLALKEGLLVGISSGAAAAAAIRIAKRPENAGKLIVAVFPSFGERYLSTVLFESVKRETENMVFEP 325          
BLAST of CX296396 vs. ExPASy Swiss-Prot
Match: CYSK_MAIZE (Cysteine synthase OS=Zea mays PE=1 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 1.894e-58
Identity = 113/139 (81.29%), Postives = 124/139 (89.21%), Query Frame = -1
Query:  284 GTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAESMVFEP 700
            GT+TG G+YL+E NP +KLYGVEPVESAVL+GGKPGPHKIQGIGAGFIPGVLDV+LLDET+Q+SS+EAIETAK LALKEGLLVGISSG         AKRPENAGKL VVVFPSFGERYLSSVLF+S+KKEAESMV EP
Sbjct:  187 GTITGTGRYLREQNPNVKLYGVEPVESAVLNGGKPGPHKIQGIGAGFIPGVLDVDLLDETLQVSSDEAIETAKALALKEGLLVGISSGAAAAAAVRLAKRPENAGKLFVVVFPSFGERYLSSVLFQSIKKEAESMVVEP 325          
BLAST of CX296396 vs. ExPASy Swiss-Prot
Match: CYSK2_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 9.400e-58
Identity = 111/139 (79.86%), Postives = 122/139 (87.77%), Query Frame = -1
Query:  284 GTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAESMVFEP 700
            GTVTG GKYLKE NPEIK+YGVEP ESA+LSGG+PGPHKIQGIGAGF+PGVLDVNLLDE VQ+SS+EAI  AK LALKEGLLVGISSG         A+RPEN GKL+VVVFPSFGERYLSSVLFES+K+EAE+MVFEP
Sbjct:  187 GTVTGTGKYLKEQNPEIKIYGVEPTESAILSGGRPGPHKIQGIGAGFVPGVLDVNLLDEVVQVSSDEAISMAKQLALKEGLLVGISSGAAAVAAIRVAQRPENKGKLVVVVFPSFGERYLSSVLFESIKREAENMVFEP 325          
BLAST of CX296396 vs. ExPASy Swiss-Prot
Match: CYSK_SPIOL (Cysteine synthase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.228e-57
Identity = 113/138 (81.88%), Postives = 123/138 (89.13%), Query Frame = -1
Query:  287 GTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAESMVFE 700
            GT+TGAGKYLKE NP++KL G+EPVESAVLSGGKPGPHKIQG+GAGFIPGVLDVN++DE VQISSEE+IE AKLLALKEGLLVGISSG         AKRPENAGKLIV VFPSFGERYLSSVLF+SV+KEAESMV E
Sbjct:  187 GTITGAGKYLKEQNPDVKLIGLEPVESAVLSGGKPGPHKIQGLGAGFIPGVLDVNIIDEVVQISSEESIEMAKLLALKEGLLVGISSGAAAAAAIKVAKRPENAGKLIVAVFPSFGERYLSSVLFDSVRKEAESMVIE 324          
BLAST of CX296396 vs. ExPASy Swiss-Prot
Match: CYSK_SOLTU (Cysteine synthase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.735e-57
Identity = 109/139 (78.42%), Postives = 124/139 (89.21%), Query Frame = -1
Query:  284 GTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAESMVFEP 700
            GT+TG+GKYL+E NP +KLYGVEPVESA+LSGGKPGPHKIQGIGAGFIPGVL+VNL+D+ VQ+SSEE+IE AKLLALKEGLLVGISSG         AKRPENAGKLIVV+FPSFGERYLSSVLFE+V++EAE+M  EP
Sbjct:  187 GTITGSGKYLREQNPNVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPGVLEVNLIDDVVQVSSEESIEMAKLLALKEGLLVGISSGAAAAAAIKVAKRPENAGKLIVVIFPSFGERYLSSVLFETVRREAENMTVEP 325          
BLAST of CX296396 vs. ExPASy Swiss-Prot
Match: CYSK1_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS1 PE=2 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 6.737e-56
Identity = 108/138 (78.26%), Postives = 123/138 (89.13%), Query Frame = -1
Query:  287 GTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAESMVFE 700
            GT+TGAG+YL+E NP+IK+YGVEPVESAVLSGGKPGPHKIQGIGAGF+PGVLDV+L++ETVQ+SS+EAIE AK LALKEGLLVGISSG         A+RPEN GKL VVVFPSFGERYLSSVLF+S+KKEAE+MV E
Sbjct:  184 GTITGAGRYLREQNPDIKIYGVEPVESAVLSGGKPGPHKIQGIGAGFVPGVLDVDLINETVQVSSDEAIEMAKALALKEGLLVGISSGAAAAAAVRLAQRPENEGKLFVVVFPSFGERYLSSVLFQSIKKEAENMVVE 321          
BLAST of CX296396 vs. ExPASy Swiss-Prot
Match: CYSK_WHEAT (Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.560e-55
Identity = 107/138 (77.54%), Postives = 120/138 (86.96%), Query Frame = -1
Query:  287 GTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAESMVFE 700
            GT+TG GKYL+E NP IKLYGVEP ESA+L+GGKPGPHKIQGIGAGFIPGVLDV+++DET+Q+SS+E+IE AK LALKEGLLVGISSG         A+RPENAGKL VVVFPSFGERYLSSVLF S+KKEAESMV E
Sbjct:  188 GTITGTGKYLQEQNPNIKLYGVEPTESAILNGGKPGPHKIQGIGAGFIPGVLDVDIIDETIQVSSDESIEMAKSLALKEGLLVGISSGAAAAAAIKVAQRPENAGKLFVVVFPSFGERYLSSVLFHSIKKEAESMVVE 325          
BLAST of CX296396 vs. ExPASy Swiss-Prot
Match: CYSK1_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.830e-54
Identity = 103/138 (74.64%), Postives = 120/138 (86.96%), Query Frame = -1
Query:  287 GTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAESMVFE 700
            GT+TGAGKYLKE NP +KLYGVEP+ESA+LSGGKPGPHKIQGIGAGFIP VL+V+L+DE VQ+SS+E+I+ A+LLALKEGLLVGISSG         AKRPENAGKL V VFPSFGERYLS+VLF++ +KEAESM F+
Sbjct:  184 GTITGAGKYLKEQNPNVKLYGVEPIESAILSGGKPGPHKIQGIGAGFIPSVLEVDLIDEVVQVSSDESIDMARLLALKEGLLVGISSGAAAAAAIKLAKRPENAGKLFVAVFPSFGERYLSTVLFDATRKEAESMTFQ 321          
BLAST of CX296396 vs. ExPASy Swiss-Prot
Match: CYSK2_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.076e-53
Identity = 103/138 (74.64%), Postives = 118/138 (85.51%), Query Frame = -1
Query:  287 GTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAESMVFE 700
            GT+TGAGKYLKE NP +KLYGVEPVESA+LSGGKPGPHKIQGIGAGFIP VL+ NL+DE VQ+SS+E+I+ A+LLA +EGLLVGISSG         AKRPENAGKL V VFPSFGERYLS+VLF++ +KEAESM FE
Sbjct:  186 GTITGAGKYLKEQNPNVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPNVLETNLIDEVVQVSSDESIDMARLLAREEGLLVGISSGAAAAAAIKLAKRPENAGKLFVAVFPSFGERYLSTVLFDATRKEAESMTFE 323          
BLAST of CX296396 vs. ExPASy Swiss-Prot
Match: CYSK1_ARATH (Cysteine synthase OS=Arabidopsis thaliana GN=OASA1 PE=1 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 4.519e-52
Identity = 100/138 (72.46%), Postives = 118/138 (85.51%), Query Frame = -1
Query:  287 GTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAESMVFE 700
            GT+TGAGKYLKE N  +KLYGVEPVESA+LSGGKPGPHKIQGIGAGFIP VL+V+L+DE VQ+SS+E+I+ A+ LALKEGLLVGISSG         A+RPENAGKL V +FPSFGERYLS+VLF++ +KEAE+M FE
Sbjct:  184 GTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERYLSTVLFDATRKEAEAMTFE 321          
The following BLAST results are available for this feature:
BLAST of CX296396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CYSK_CITLA1.186e-6084.89Cysteine synthase OS=Citrullus lanatus PE=2 SV=1[more]
CYSK_MAIZE1.894e-5881.29Cysteine synthase OS=Zea mays PE=1 SV=2[more]
CYSK2_ORYSJ9.400e-5879.86Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSK_SPIOL1.228e-5781.88Cysteine synthase OS=Spinacia oleracea PE=1 SV=1[more]
CYSK_SOLTU2.735e-5778.42Cysteine synthase OS=Solanum tuberosum PE=2 SV=1[more]
CYSK1_ORYSJ6.737e-5678.26Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSK_WHEAT2.560e-5577.54Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=... [more]
CYSK1_BRAJU2.830e-5474.64Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSK2_BRAJU1.076e-5374.64Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSK1_ARATH4.519e-5272.46Cysteine synthase OS=Arabidopsis thaliana GN=OASA1... [more]

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Properties
Property NameValue
Genbank descriptionC05140C04SK FerrChloL1 Citrus clementina cDNA clone C05140C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296396 ID=CX296396; Name=CX296396; organism=Citrus clementina; type=EST; length=712bp
AGGCCTCGTGCCGAATTCGGCACGAGGAACACCTACTTCCAAACTTTATT
CATTCTCAAGCACAGCATAGACTACAGAACTTTAACCCATATGAGTTTCC
ACAGATTTTTACACAAACAGTGAAACCTCCTCCAGAGGGTAAGGAATTGC
AAAGATTTGTAGTTGTTTATAAGAAAACATGAAGAAGCCAAAGCATCCAA
CCAAAATGAAATTCTGACTAGAAAAGCAAGTTAGTCCCCACAGAATACGG
GACTGGTGACTCAAAAGGTTTGGGCATATCTCACGGCTCAAACACCATGC
TCTCTGCCTCCTTTTTCACAGATTCAAATAAAACAGAAGAGAGGTATCGC
TCTCCGAAGCTGGGGAAGACCACCACAATGAGTTTTCCAGCATTTTCTGG
CCTCTTTGCTATCCGAATTGCAGCTGCAGTAGCAGCTCCGGATGATATCC
CAACCAACAATCCTTCTTTAAGTGCAAGAAGCTTCGCAGTCTCAATAGCT
TCTTCACTTGATATTTGAACAGTTTCATCTAGTAAATTGACGTCCAAAAC
TCCAGGGATGAAGCCAGCACCTATTCCTTGGATCTTATGGGGACCAGGTT
TCCCTCCAGACAGCACAGCACTTTCAACTGGTTCAACGCCATAGAGCTTA
ATTTCAGGATTATGCTCTTTGAGATACTTCCCTGCACCAGTGACAGTACC
ACAGTCCCTATA
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