CX296399

Overview
NameCX296399
Unique NameCX296399
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296399_ssr243 microsatellite CX296399_ssr243:243..254. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12025 contig Ccv1_Contig12025:714..1389. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296399 vs. ExPASy Swiss-Prot
Match: SY121_ARATH (Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.247e-50
Identity = 99/135 (73.33%), Postives = 112/135 (82.96%), Query Frame = -3
Query:  270 TGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAXXXXXXXXXXXXXXXVKPWD 674
            TGENPDE+TLDRLISTGESE FLQKAIQEQGRGR+LDTINEIQERHDAVK +EKNL+ELHQVFLDMAVLV+ QG QLDDIES V RA+S++RGGT++LQTAR YQ +TRKWTCIA               +KPW+
Sbjct:  176 TGENPDERTLDRLISTGESERFLQKAIQEQGRGRVLDTINEIQERHDAVKDIEKNLRELHQVFLDMAVLVEHQGAQLDDIESHVGRASSFIRGGTDQLQTARVYQKNTRKWTCIAIIILIIIITVVVLAVLKPWN 310          
BLAST of CX296399 vs. ExPASy Swiss-Prot
Match: SY122_ARATH (Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.385e-46
Identity = 96/135 (71.11%), Postives = 104/135 (77.04%), Query Frame = -3
Query:  270 TGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAXXXXXXXXXXXXXXXVKPWD 674
            TGE PDE TL+RLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVK +EK+L ELHQVFLDMAVLV+ QG QLDDIE  V+RANS VR G +RL  AR YQ +TRKWTC A               VKPW+
Sbjct:  175 TGEYPDEATLERLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKDIEKSLNELHQVFLDMAVLVEHQGAQLDDIEGNVKRANSLVRSGADRLVKARFYQKNTRKWTCFAILLLLIIVVLIVVFTVKPWE 309          
BLAST of CX296399 vs. ExPASy Swiss-Prot
Match: SY124_ARATH (Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.724e-42
Identity = 84/115 (73.04%), Postives = 102/115 (88.70%), Query Frame = -3
Query:  330 TGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIA 674
            TGE  DE+T++ LIS+GESE FLQKAIQEQGRG+ILDTI+EIQERHDAVK +EKNL ELHQVFLDMA LV++QG+QL+DIES V +A+S+VR GT++LQ AR+YQ S+RKWTC A
Sbjct:  165 TGEQADEQTIENLISSGESENFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNDIESHVSKASSFVRRGTDQLQDAREYQKSSRKWTCYA 279          
BLAST of CX296399 vs. ExPASy Swiss-Prot
Match: SY125_ARATH (Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.252e-42
Identity = 84/115 (73.04%), Postives = 102/115 (88.70%), Query Frame = -3
Query:  330 TGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIA 674
            TGE  DE+T+D LI++GESE FLQKAIQEQGRG+ILDTI+EIQERHDAVK +EKNL ELHQVFLDMA LV+AQG+QL++IES V +A+S+VR GT++LQ AR+YQ S+RKWTC A
Sbjct:  160 TGEKADEQTIDNLIASGESENFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLLELHQVFLDMAALVEAQGQQLNNIESHVAKASSFVRRGTDQLQDAREYQKSSRKWTCYA 274          
BLAST of CX296399 vs. ExPASy Swiss-Prot
Match: SY123_ARATH (Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.412e-36
Identity = 72/115 (62.61%), Postives = 95/115 (82.61%), Query Frame = -3
Query:  330 TGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIA 674
            TG+  DE+T+++LIS+GESE FLQKAIQEQGRG+++DT++EIQERHD VK +E++L ELHQVFLDMA LV+AQG  L+DIES V +A+S+V  GT++L  A+  Q + RKW CIA
Sbjct:  168 TGQKADEETVEKLISSGESERFLQKAIQEQGRGQVMDTLSEIQERHDTVKEIERSLLELHQVFLDMAALVEAQGNMLNDIESNVSKASSFVMRGTDQLHGAKVLQRNNRKWACIA 282          
BLAST of CX296399 vs. ExPASy Swiss-Prot
Match: SY132_ARATH (Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.759e-35
Identity = 75/134 (55.97%), Postives = 90/134 (67.16%), Query Frame = -3
Query:  273 TGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAXXXXXXXXXXXXXXXVKPW 674
            TGE  DE T+D LI TG SE   QKAIQEQGRG+++DT+ EIQERHDAV+ LEK L +L Q+FLDMAVLV AQGE LD+IESQV  A  +V+ G   LQ A+  Q ++RKW CIA               +KPW
Sbjct:  166 TGERADEDTIDELIETGNSEQIFQKAIQEQGRGQVMDTLAEIQERHDAVRDLEKKLLDLQQIFLDMAVLVDAQGEMLDNIESQVSSAVDHVQSGNTALQRAKSLQKNSRKWMCIAIIILLIVVAVIVVGVLKPW 299          
BLAST of CX296399 vs. ExPASy Swiss-Prot
Match: SY131_ARATH (Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.120e-33
Identity = 74/134 (55.22%), Postives = 91/134 (67.91%), Query Frame = -3
Query:  273 TGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAXXXXXXXXXXXXXXXVKPW 674
            TG+  DE+ +DRLI TG+SE   QKAI+EQGRG+I+DT+ EIQERHDAV+ LEK L +L QVFLDMAVLV AQGE LD+IE+ V  A  +V+ G  +L  A K Q S+RKW CIA               +KPW
Sbjct:  167 TGQRADEEAIDRLIETGDSEQIFQKAIREQGRGQIMDTLAEIQERHDAVRDLEKKLLDLQQVFLDMAVLVDAQGEMLDNIENMVSSAVDHVQSGNNQLTKAVKSQKSSRKWMCIAILILLIIIIITVISVLKPW 300          
BLAST of CX296399 vs. ExPASy Swiss-Prot
Match: SY111_ARATH (Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana GN=KN PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.386e-28
Identity = 58/115 (50.43%), Postives = 88/115 (76.52%), Query Frame = -3
Query:  333 TGENPDEKTLDRLISTGES-ETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCI 674
            TGE+ +++ ++++I+     E FL +AIQE G+G++L+T+ EIQ+R+DA K +EK+L ELHQVFLDMAV+V++QGEQ+D+IE  V  A+ YV  G   L+TA+ +Q ++RKW CI
Sbjct:  173 TGEHANDEMIEKIITDNAGGEEFLTRAIQEHGKGKVLETVVEIQDRYDAAKEIEKSLLELHQVFLDMAVMVESQGEQMDEIEHHVINASHYVADGANELKTAKSHQRNSRKWMCI 287          
BLAST of CX296399 vs. ExPASy Swiss-Prot
Match: SY112_ARATH (Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.621e-16
Identity = 44/111 (39.64%), Postives = 69/111 (62.16%), Query Frame = -3
Query:  342 TGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKW 674
            TGE P  + ++++IS   S + L K  + +    +     + +ERH+AV  ++++L  LHQVFLDMAVLV+ QG+++DDIE+ V  A S+V GGT  L  A + +  T+ W
Sbjct:  177 TGEEPSNEDMEKMISGSGSCSDLVKTFEVKPEMDL-----KTKERHEAVNDIKRSLNRLHQVFLDMAVLVETQGDRIDDIEANVANAGSFVSGGTNSLYYANQMKKKTKSW 282          
BLAST of CX296399 vs. ExPASy Swiss-Prot
Match: STX1A_DROME (Syntaxin-1A OS=Drosophila melanogaster GN=Syx1A PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.165e-14
Identity = 40/110 (36.36%), Postives = 66/110 (60.00%), Query Frame = -3
Query:  345 TGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRK 674
            TG   ++  L++++  G S  F Q  I E  + +   T+ +I+ RH  +  LE +++ELH +F+DMA+LV++QGE +D IE  V+ A  YV+  T+  + A KYQ   R+
Sbjct:  159 TGRPTNDDELEKMLEEGNSSVFTQGIIMETQQAK--QTLADIEARHQDIMKLETSIKELHDMFMDMAMLVESQGEMIDRIEYHVEHAMDYVQTATQDTKKALKYQSKARR 266          
The following BLAST results are available for this feature:
BLAST of CX296399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
SY121_ARATH2.247e-5073.33Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=... [more]
SY122_ARATH4.385e-4671.11Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=... [more]
SY124_ARATH1.724e-4273.04Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=... [more]
SY125_ARATH2.252e-4273.04Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=... [more]
SY123_ARATH2.412e-3662.61Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=... [more]
SY132_ARATH7.759e-3555.97Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=... [more]
SY131_ARATH1.120e-3355.22Putative syntaxin-131 OS=Arabidopsis thaliana GN=S... [more]
SY111_ARATH5.386e-2850.43Syntaxin-related protein KNOLLE OS=Arabidopsis tha... [more]
SY112_ARATH3.621e-1639.64Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=... [more]
STX1A_DROME1.165e-1436.36Syntaxin-1A OS=Drosophila melanogaster GN=Syx1A PE... [more]

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Properties
Property NameValue
Genbank descriptionC05140C08SK FerrChloL1 Citrus clementina cDNA clone C05140C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296399 ID=CX296399; Name=CX296399; organism=Citrus clementina; type=EST; length=676bp
CAATGAAAAATACACAAAAGTAGCACCCAACAGATAATATACATGCAACA
AAACCAAAATACTAGGTACAAAAAAGAATATAGAAACGCATATGACTAAG
CTCAACTGTCTCACTCACCCCCCATCAAATCTCAACTGTTCAAAAGCAAT
TAAATCCAGCTAAAATAAGGCATAATGAAATCCTAAGGCTGAGCTTAGGA
TGGCGGAGTTTGTGCCTGAGGCGTTGGATTCTGCGGACTACTACCACCAC
CACCATTGCCACCACCATTGTCCCATGGTTTCACAGTGAACAACACCACA
AACAGGATTATGATTAGCAATATTGTGATGGCGATACAGGTCCATTTTCG
GGTACTTAGCTGATACTTCCTGGCTGTTTGCAATCTCTCGGTCCCGCCTC
TGACATATGAATTAGCTCGTTGCACCTGGCTCTCAATGTCGTCCAATTGT
TCACCTTGGGCCTGGACCAATACCGCCATGTCTAGGAAAACTTGGTGCAA
TTCCTGAAGATTTTTCTCCAGCACTTTCACGGCATCATGCCTCTCTTGTA
TCTCATTTATGGTGTCCAAAATTCTTCCCCTTCCTTGCTCCTGAATTGCT
TTCTGCAAGAATGTTTCACTCTCTCCAGTAGAAATCAAGCGATCTAAGGT
CTTCTCGTCGGGATTCTCTCCGGTGA
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