CX296405

Overview
NameCX296405
Unique NameCX296405
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length270
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX296405 vs. ExPASy Swiss-Prot
Match: AMP1A_ARATH (Methionine aminopeptidase 1A OS=Arabidopsis thaliana GN=MAP1A PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 3.861e-15
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 3 
Query:   78 KSAAFCSQDCFKASWSSHKSVHFKENLSAPVTEKNSSLTKEGWSDCLKKETGSNSKNSPF*LDW 269
            + A+FC+Q+CFKA+WSSHKSVH K  LS+ + ++NS L  +GW  C+KK      K   F  DW
Sbjct:   37 EQASFCTQECFKAAWSSHKSVHVKAQLSS-IGDQNSDLISQGWLYCVKKGQARTPKLPHF--DW 97

HSP 2 Score: 36.965 bits (84), Expect = 3.861e-15
Identity = 15/30 (50.00%), Postives = 21/30 (70.00%), Query Frame = 2 
Query:    2 SLWCVR*EEPAHLPCPKWMELNVPSEERCF 91
            +L C R E+PAHL CPK ++L +P E+  F
Sbjct:   12 TLSCARCEKPAHLQCPKCIDLKLPREQASF 41
The following BLAST results are available for this feature:
BLAST of CX296405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AMP1A_ARATH3.861e-1548.44Methionine aminopeptidase 1A OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC05140D04SK FerrChloL1 Citrus clementina cDNA clone C05140D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296405 ID=CX296405; Name=CX296405; organism=Citrus clementina; type=EST; length=270bp
CAGCTTATGGTGTGTTCGATGAGAGGAGCCAGCTCATCTTCCTTGCCCAA
AATGGATGGAGCTGAATGTTCCAAGTGAAGAGCGCTGCTTTCTGTTCTCA
GGACTGCTTCAAAGCTTCTTGGAGCTCTCACAAATCTGTTCATTTCAAGG
AAAACCTGTCCGCGCCAGTCACTGAAAAAAATTCATCTTTGACCAAGGAA
GGTTGGAGTGATTGTCTCAAGAAAGAGACAGGCTCCAACTCCAAAAATTC
CCCATTTTGACTGGACTGGA
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