CX296410

Overview
NameCX296410
Unique NameCX296410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7595 contig Ccv1_Contig7595:374..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK12_TOBAC (50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum GN=RPL12 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.760e-29
Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVVIDEVPSNARIA IKAVRALT+LALKEAK+LIEGLPKKFKEGVSKD+AEDAKKQLEEAGAKVS+
Sbjct:  116 KTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVSI 185          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK12_NICSY (50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.760e-29
Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVVIDEVPSNARIA IKAVRALT+LALKEAK+LIEGLPKKFKEGVSKD+AEDAKKQLEEAGAKVS+
Sbjct:  116 KTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVSI 185          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK12_SPIOL (50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea GN=RPL12 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 8.318e-28
Identity = 63/71 (88.73%), Postives = 68/71 (95.77%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSVV 268
            KTEFDV IDEVPSNARI+VIKAVRALT+L LKEAK+LIEGLPKK KEGVSKDDAEDAKKQLE+AGAKVS+V
Sbjct:  119 KTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQLEDAGAKVSIV 189          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK12_ORYSJ (50S ribosomal protein L12, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL12-2 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 5.391e-27
Identity = 62/70 (88.57%), Postives = 66/70 (94.29%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVVI+EVPS+ARIA IK VRALTNLALKEAKDLIEGLPKK KEGVSKD+AEDAKKQLEE GAKVS+
Sbjct:  115 KTEFDVVIEEVPSSARIASIKVVRALTNLALKEAKDLIEGLPKKVKEGVSKDEAEDAKKQLEEVGAKVSI 184          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK123_ARATH (50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana GN=RPL12C PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 7.785e-26
Identity = 58/70 (82.86%), Postives = 69/70 (98.57%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEFDVVI+EVPS++RIAVIKAVRALT+LALKEAK+LIEGLPKKFKEG++KD+AE+AKK LEEAGAKVS+
Sbjct:  117 QTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKTLEEAGAKVSI 186          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK121_ARATH (50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana GN=RPL12A PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.785e-26
Identity = 58/70 (82.86%), Postives = 69/70 (98.57%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEFDVVI+EVPS++RIAVIKAVRALT+LALKEAK+LIEGLPKKFKEG++KD+AE+AKK LEEAGAKVS+
Sbjct:  121 QTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKTLEEAGAKVSI 190          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK122_SECCE (50S ribosomal protein L12-2, chloroplastic OS=Secale cereale GN=RPL12-2 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.608e-25
Identity = 58/70 (82.86%), Postives = 64/70 (91.43%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEFDVVI+EVPS+ARIA IK VRALTNLALKEAKDLIEGLPKK KE VSKD+AE+AKKQLE  GAKVS+
Sbjct:  104 QTEFDVVIEEVPSSARIATIKIVRALTNLALKEAKDLIEGLPKKLKEAVSKDEAEEAKKQLEGVGAKVSI 173          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK121_SECCE (50S ribosomal protein L12-1, chloroplastic OS=Secale cereale GN=RPL12-1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.608e-25
Identity = 58/70 (82.86%), Postives = 64/70 (91.43%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEFDVVI+EVPS+ARIA IK VRALTNLALKEAKDLIEGLPKK KE VSKD+AE+AKKQLE  GAKVS+
Sbjct:  104 QTEFDVVIEEVPSSARIATIKIVRALTNLALKEAKDLIEGLPKKLKEAVSKDEAEEAKKQLEGVGAKVSI 173          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SYNP6 (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplL PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.820e-22
Identity = 51/70 (72.86%), Postives = 60/70 (85.71%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV++EVP++ +IAV+K VR +T L LKEAKDL+E  PK  KEGVSKDDAE AKK+LEEAGAKVSV
Sbjct:   58 KTEFDVVLEEVPADKKIAVLKVVRGITGLGLKEAKDLVEAAPKPIKEGVSKDDAEAAKKELEEAGAKVSV 127          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SYNE7 (50S ribosomal protein L7/L12 OS=Synechococcus elongatus (strain PCC 7942) GN=rplL PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.820e-22
Identity = 51/70 (72.86%), Postives = 60/70 (85.71%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV++EVP++ +IAV+K VR +T L LKEAKDL+E  PK  KEGVSKDDAE AKK+LEEAGAKVSV
Sbjct:   58 KTEFDVVLEEVPADKKIAVLKVVRGITGLGLKEAKDLVEAAPKPIKEGVSKDDAEAAKKELEEAGAKVSV 127          
The following BLAST results are available for this feature:
BLAST of CX296410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK12_TOBAC5.760e-2992.8650S ribosomal protein L12, chloroplastic OS=Nicoti... [more]
RK12_NICSY5.760e-2992.8650S ribosomal protein L12, chloroplastic OS=Nicoti... [more]
RK12_SPIOL8.318e-2888.7350S ribosomal protein L12, chloroplastic OS=Spinac... [more]
RK12_ORYSJ5.391e-2788.5750S ribosomal protein L12, chloroplastic OS=Oryza ... [more]
RK123_ARATH7.785e-2682.8650S ribosomal protein L12-3, chloroplastic OS=Arab... [more]
RK121_ARATH7.785e-2682.8650S ribosomal protein L12-1, chloroplastic OS=Arab... [more]
RK122_SECCE8.608e-2582.8650S ribosomal protein L12-2, chloroplastic OS=Seca... [more]
RK121_SECCE8.608e-2582.8650S ribosomal protein L12-1, chloroplastic OS=Seca... [more]
RL7_SYNP66.820e-2272.8650S ribosomal protein L7/L12 OS=Synechococcus sp. ... [more]
RL7_SYNE76.820e-2272.8650S ribosomal protein L7/L12 OS=Synechococcus elon... [more]

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Properties
Property NameValue
Genbank descriptionC05140D11SK FerrChloL1 Citrus clementina cDNA clone C05140D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296410 ID=CX296410; Name=CX296410; organism=Citrus clementina; type=EST; length=559bp
GAGGGTCGCCCCCGGTGCCCCCGGAGCCGAAGCGCCTGCTGCCGTGGAGG
AGGAGAAGACGGAGTTCGACGTCGTCATTGACGAGGTGCCCAGTAATGCG
AGAATCGCGGTCATTAAGGCCGTGAGAGCGCTGACGAACTTGGCTTTGAA
AGAGGCTAAGGACCTTATTGAAGGGTTGCCTAAGAAGTTCAAAGAAGGCG
TGTCGAAAGATGATGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGC
GCTAAAGTTTCCGTTGTTTAGAGATGATTATGTTGATTTTTGTGTGCTCT
CTTTTTTCTTTTGGTAATTTGTAGTTTTAAAAAAAGTGTAATTTGGATTT
GTAGTGAACATGAGTTTTTTCTGTTTTTGCACATGATACGTTTGTTAAAT
TGCCTGCATGAGTTGAAGTGTCTTGATGTATCTTTTGTGAAAAGAGCTGA
ATTGTGGGAGTTGAACGAGATAAGGTAACTCCAGATAATTAATGTTTTTC
CTCGTGCCGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAAGGGG
GGGCCCGGT
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