CX296415

Overview
NameCX296415
Unique NameCX296415
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length209
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10192 contig Ccv1_Contig10192:261..469. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296415 vs. ExPASy Swiss-Prot
Match: ATL5H_ARATH (RING-H2 finger protein ATL5H OS=Arabidopsis thaliana GN=ATL5H PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.030e-12
Identity = 36/69 (52.17%), Postives = 44/69 (63.77%), Query Frame = 2 
Query:    5 LISALFFMGFFSIYIRHCSDS-SNSVIXXXXXXXXXXXXXXXXXLDREVIDTFPTFVYSEVKTLKVGKG 208
            +I+ALFFMGFF++YIRHC+ +   SV                  LD E I+TFPTFVYSEVKT K+GKG
Sbjct:   52 VIAALFFMGFFTVYIRHCTGAVDGSVTPAGGARRRVTNATVARGLDAETIETFPTFVYSEVKTQKIGKG 120
[Close]
BLAST of CX296415 vs. ExPASy Swiss-Prot
Match: ATL3B_ARATH (RING-H2 finger protein ATL3B OS=Arabidopsis thaliana GN=ATL3B PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.746e-11
Identity = 35/69 (50.72%), Postives = 43/69 (62.32%), Query Frame = 2 
Query:    5 LISALFFMGFFSIYIRHCSDSSNS-VIXXXXXXXXXXXXXXXXXLDREVIDTFPTFVYSEVKTLKVGKG 208
            LI+ALFFMGFFSIY RHCS   ++ V                  LD  V++TFPTF+YS+VKT K+GKG
Sbjct:   56 LIAALFFMGFFSIYFRHCSGVPDAGVSPAGGARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKG 124
The following BLAST results are available for this feature:
BLAST of CX296415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ATL5H_ARATH3.030e-1252.17RING-H2 finger protein ATL5H OS=Arabidopsis thalia... [more]
ATL3B_ARATH9.746e-1150.72RING-H2 finger protein ATL3B OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC05140E10SK FerrChloL1 Citrus clementina cDNA clone C05140E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296415 ID=CX296415; Name=CX296415; organism=Citrus clementina; type=EST; length=209bp
GAGGTTGATTTCGGCTCTCTTCTTCATGGGCTTCTTCTCCATCTACATTC
GCCACTGCTCCGACTCCAGCAACTCCGTCATCCGCCCCGCCGGCGCCGGA
GGCAACCGCTCCAGGCGCGGCGCCGCCCGCGGCCTCGACCGCGAGGTCAT
CGACACTTTCCCGACCTTCGTGTACTCGGAGGTCAAGACGCTGAAGGTCG
GCAAAGGCG
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