CX296417

Overview
NameCX296417
Unique NameCX296417
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length267
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296417 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.044e-32
Identity = 67/84 (79.76%), Postives = 75/84 (89.29%), Query Frame = 3
Query:   15 RHEGIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAKVYDDEVRKCISGVGVESIDKSLVNSKEAAPTFEQPRMTMEK 266
            R + IGVC GIFR+DNVA +DIVKLVDTFPGQSIDFFGALRA+VYDDEVRK I+GVGV+SI K LVNSKE  PTFEQP+MT+EK
Sbjct:  309 REDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEK 392          
BLAST of CX296417 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.767e-32
Identity = 65/84 (77.38%), Postives = 74/84 (88.10%), Query Frame = 3
Query:   15 RHEGIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAKVYDDEVRKCISGVGVESIDKSLVNSKEAAPTFEQPRMTMEK 266
            R + IGVCKGIFR DNVADDDIVKLVDTFPGQSIDFFGALRA+VY DEVRK +S VGV++I K LVNSKE  P+FEQP+MT++K
Sbjct:  309 REDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDK 392          
BLAST of CX296417 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.465e-30
Identity = 62/84 (73.81%), Postives = 73/84 (86.90%), Query Frame = 3
Query:   15 RHEGIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAKVYDDEVRKCISGVGVESIDKSLVNSKEAAPTFEQPRMTMEK 266
            R + IGVCKGIFR DNV ++DIVK+VD FPGQSIDFFGALRA+VYDDEVRK +S VGV++I K LVNSKE  PTFEQP+MT++K
Sbjct:  309 REDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDK 392          
BLAST of CX296417 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 2.499e-30
Identity = 61/84 (72.62%), Postives = 72/84 (85.71%), Query Frame = 3
Query:   15 RHEGIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAKVYDDEVRKCISGVGVESIDKSLVNSKEAAPTFEQPRMTMEK 266
            R + +GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRA+VYDDEVRK +S  GVE+I K LVNS+E  P FEQP+MT+EK
Sbjct:  300 RDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEK 383          
BLAST of CX296417 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.262e-30
Identity = 60/84 (71.43%), Postives = 72/84 (85.71%), Query Frame = 3
Query:   15 RHEGIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAKVYDDEVRKCISGVGVESIDKSLVNSKEAAPTFEQPRMTMEK 266
            R + IGVCKGIFR DNV D+ +V+LVDTFPGQSIDFFGALRA+VYDDEVRK +  +GVE+I K LVNS+E  PTF+QP+MT+EK
Sbjct:  296 REDRIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEK 379          
BLAST of CX296417 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 5.566e-30
Identity = 60/84 (71.43%), Postives = 72/84 (85.71%), Query Frame = 3
Query:   15 RHEGIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAKVYDDEVRKCISGVGVESIDKSLVNSKEAAPTFEQPRMTMEK 266
            R + +GVCKGIFR D V ++DI KLVDTFPGQSIDFFGALRA+VYDDEVRK ISGVGV++  K LVNSKE  PTF+QP+M+++K
Sbjct:  311 RDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDK 394          
BLAST of CX296417 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.240e-29
Identity = 61/84 (72.62%), Postives = 71/84 (84.52%), Query Frame = 3
Query:   15 RHEGIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAKVYDDEVRKCISGVGVESIDKSLVNSKEAAPTFEQPRMTMEK 266
            R + IGVCKGIFR D V + DIV+LVD  PGQSIDFFGALRA+VYDDEVRK ISGVGV+S+ K LVNSKE  PTF+QP+MT++K
Sbjct:  313 REDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDK 396          
BLAST of CX296417 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.763e-29
Identity = 61/84 (72.62%), Postives = 71/84 (84.52%), Query Frame = 3
Query:   15 RHEGIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAKVYDDEVRKCISGVGVESIDKSLVNSKEAAPTFEQPRMTMEK 266
            R + IG+C GIFR D V  +DIVKLVDTFPGQSIDFFGALRA+VYDDEVRK   GVGVE I ++LVNSKE+ PTF+QP+MT+EK
Sbjct:  306 REDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEK 389          
BLAST of CX296417 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.608e-29
Identity = 57/84 (67.86%), Postives = 72/84 (85.71%), Query Frame = 3
Query:   15 RHEGIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAKVYDDEVRKCISGVGVESIDKSLVNSKEAAPTFEQPRMTMEK 266
            R + IGVCKGIFR DNV ++ +VK+VD+FPGQSIDFFGALRA+VYDDEVRK +SG G+E I + L+NS++  PTFEQP+MT+EK
Sbjct:  308 REDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEK 391          
BLAST of CX296417 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.154e-29
Identity = 57/84 (67.86%), Postives = 71/84 (84.52%), Query Frame = 3
Query:   15 RHEGIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAKVYDDEVRKCISGVGVESIDKSLVNSKEAAPTFEQPRMTMEK 266
            R + IGVCKGIFR DNV ++ ++K+VDTFPGQSIDFFGALRA+VYDDEVRK +SG G+E+I   L+NS +  PTFEQP+MT+EK
Sbjct:  313 REDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEK 396          
The following BLAST results are available for this feature:
BLAST of CX296417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCA_MALDO2.044e-3279.76Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR7.767e-3277.38Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR1.465e-3073.81Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ2.499e-3072.62Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU4.262e-3071.43Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU5.566e-3071.43Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU1.240e-2972.62Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA2.763e-2972.62Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN3.608e-2967.86Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC6.154e-2967.86Ribulose bisphosphate carboxylase/oxygenase activa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05140F02SK FerrChloL1 Citrus clementina cDNA clone C05140F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296417 ID=CX296417; Name=CX296417; organism=Citrus clementina; type=EST; length=267bp
CCTCGTGCCTAATTCGGCACGAGGGTATTGGTGTGTGCAAGGGTATCTTC
AGGAATGACAATGTGGCTGATGACGACATTGTCAAGCTTGTCGACACCTT
CCCCGGCCAATCCATTGATTTCTTTGGAGCCCTGAGGGCCAAAGTCTATG
ATGATGAGGTGAGGAAATGCATCTCTGGTGTTGGTGTTGAAAGCATTGAC
AAGAGCCTTGTGAACTCAAAGGAAGCAGCCCCAACATTCGAGCAACCAAG
GATGACAATGGAGAAGC
back to top