CX296421

Overview
NameCX296421
Unique NameCX296421
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10877 contig Ccv1_Contig10877:601..1318. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296421 vs. ExPASy Swiss-Prot
Match: GPT2_ARATH (Glucose-6-phosphate/phosphate translocator 2, chloroplastic OS=Arabidopsis thaliana GN=GPT2 PE=2 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 2.242e-107
Identity = 190/234 (81.20%), Postives = 203/234 (86.75%), Query Frame = 2
Query:    5 DLEFWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFXXXXXXXXXXXXXNYYACLSMMSLLILTPFAIAVEGPQMWAAGWQKAIAQIGPNFVWWVAAQSIFYHLYNQVSYMSLDQISPLTFSIGNTMKRXXXXXXXXXXFHTPVQPVNALGAAIAILGTFIYSQAKQ 706
            DLEFWK+LFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRF  GET P+PVY+SLLPIIGGCALAA+TELNFN+ GFMGAMISNLAFVFRNIF             NYYACLSMMSL+ILTPF+IAVE PQMWAAGWQ A++Q+GPNFVWWV AQS+FYHLYNQVSYMSLDQISPLTFSIGNTMKR          FHTP+QPVNALGAAIAI GTF+YSQAKQ
Sbjct:  155 DLEFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFFMGETFPLPVYLSLLPIIGGCALAAITELNFNITGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSMMSLVILTPFSIAVEVPQMWAAGWQNAVSQVGPNFVWWVVAQSVFYHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVASIIIFHTPIQPVNALGAAIAIFGTFLYSQAKQ 388          
BLAST of CX296421 vs. ExPASy Swiss-Prot
Match: GPT1_ARATH (Glucose-6-phosphate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=GPT1 PE=2 SV=1)

HSP 1 Score: 375.941 bits (964), Expect = 1.152e-103
Identity = 185/233 (79.40%), Postives = 198/233 (84.98%), Query Frame = 2
Query:    5 DLEFWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFXXXXXXXXXXXXXNYYACLSMMSLLILTPFAIAVEGPQMWAAGWQKAIAQIGPNFVWWVAAQSIFYHLYNQVSYMSLDQISPLTFSIGNTMKRXXXXXXXXXXFHTPVQPVNALGAAIAILGTFIYSQAK 703
            D +FWK+LFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRF+ GET P  VY+SL+PIIGGCAL+A+TELNFNMIGFMGAMISNLAFVFRNIF             NYYACLSM+SLLILTPFAIAVEGPQMW  GWQ A+A +GP FVWWV AQS+FYHLYNQVSYMSLDQISPLTFS+GNTMKR          F TPVQPVNALGAAIAILGTF+YSQAK
Sbjct:  155 DFDFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFILGETFPTSVYLSLIPIIGGCALSALTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSMLSLLILTPFAIAVEGPQMWVDGWQTALATVGPQFVWWVVAQSVFYHLYNQVSYMSLDQISPLTFSVGNTMKRISVIVSSIIIFRTPVQPVNALGAAIAILGTFLYSQAK 387          
BLAST of CX296421 vs. ExPASy Swiss-Prot
Match: TPT_FLAPR (Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria pringlei GN=TPT PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.188e-45
Identity = 95/237 (40.08%), Postives = 148/237 (62.45%), Query Frame = 2
Query:    5 DLEFWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFXXXXXXXXXXXXXNYYACLSMMSLLILTPFAIAVEGPQMWAAGWQKAIAQIGP----NFVWWVAAQSIFYHLYNQVSYMSLDQISPLTFSIGNTMKRXXXXXXXXXXFHTPVQPVNALGAAIAILGTFIYSQAK 703
            D    K L PVA  H +GHV + VS + VAVSFTH IKS EP F+   S+F+ G+++P+ +++SL P++ G ++A++TEL+FN +GF+ AMISN++F +R+I+             N YA +S++SLL   P AI +EGPQ+   G+  AIA++G     + ++WV    +FYHLYNQ++  +L++++PLT ++GN +KR          F   +    A+G +IAI G  +YS  K
Sbjct:  164 DSNLLKLLIPVAFCHALGHVTSNVSFAAVAVSFTHTIKSLEPFFNAAASQFILGQSIPITLWLSLAPVVIGVSMASLTELSFNWLGFISAMISNISFTYRSIY--SKKAMTDMDSTNLYAYISIISLLFCIPPAIILEGPQLLKHGFSDAIAKVGMTKFISDLFWV---GMFYHLYNQLAINTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNKISTQTAIGTSIAIAGVAVYSLIK 395          
BLAST of CX296421 vs. ExPASy Swiss-Prot
Match: TPT_SPIOL (Triose phosphate/phosphate translocator, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.163e-45
Identity = 95/237 (40.08%), Postives = 150/237 (63.29%), Query Frame = 2
Query:    5 DLEFWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFXXXXXXXXXXXXXNYYACLSMMSLLILTPFAIAVEGPQMWAAGWQKAIAQIG-PNFV---WWVAAQSIFYHLYNQVSYMSLDQISPLTFSIGNTMKRXXXXXXXXXXFHTPVQPVNALGAAIAILGTFIYSQAK 703
            D +  K L PVAV H IGHV + VS + VAVSFTH IK+ EP F+   S+F+ G+++P+ +++SL P++ G ++A++TEL+FN +GF+ AMISN++F +R+++             N YA +S+++L +  P AI VEGPQ+   G+  AIA++G   F+   +WV    +FYHLYNQ++  +L++++PLT ++GN +KR          F   +    A+G +IAI G  +YS  K
Sbjct:  160 DSKLLKLLIPVAVCHAIGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFVLGQSIPITLWLSLAPVVIGVSMASLTELSFNWLGFISAMISNVSFTYRSLY--SKKAMTDMDSTNIYAYISIIALFVCLPPAIIVEGPQLMKHGFNDAIAKVGLTKFISDLFWV---GMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIIAFGNKISTQTAIGTSIAIAGVALYSLIK 391          
BLAST of CX296421 vs. ExPASy Swiss-Prot
Match: TPT1_BRAOB (Triose phosphate/phosphate translocator, chloroplastic OS=Brassica oleracea var. botrytis GN=TPT PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.163e-45
Identity = 96/232 (41.38%), Postives = 145/232 (62.50%), Query Frame = 2
Query:   20 KSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFXXXXXXXXXXXXXNYYACLSMMSLLILTPFAIAVEGPQMWAAGWQKAIAQIGP----NFVWWVAAQSIFYHLYNQVSYMSLDQISPLTFSIGNTMKRXXXXXXXXXXFHTPVQPVNALGAAIAILGTFIYSQAK 703
            K L PVAV H IGHV + VS + VAVSFTH IK+ EP F+   S+FL G+ +P+ +++SL P++ G A+A++TEL+FN +GF+ AMISN++F +R+IF             N YA +S+++L +  P AI VEGPQ+   G+  AIA++G     + ++WV    +FYHLYNQ++  +L++++PLT ++GN +KR          F   +     +G  IAI G  +YS  K
Sbjct:  168 KVLIPVAVCHAIGHVTSNVSFAAVAVSFTHTIKALEPFFNASASQFLLGQPIPITLWLSLAPVVLGVAMASLTELSFNWLGFISAMISNISFTYRSIF--SKKAMTDMDSTNVYAYISIIALFVCLPPAIIVEGPQLLKHGFNDAIAKVGMTKFISDLFWV---GMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIVIFGNKISTQTGIGTGIAIAGVALYSVIK 394          
BLAST of CX296421 vs. ExPASy Swiss-Prot
Match: TPT_PEA (Triose phosphate/phosphate translocator, chloroplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.851e-44
Identity = 89/232 (38.36%), Postives = 146/232 (62.93%), Query Frame = 2
Query:   20 KSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFXXXXXXXXXXXXXNYYACLSMMSLLILTPFAIAVEGPQMWAAGWQKAIAQIG----PNFVWWVAAQSIFYHLYNQVSYMSLDQISPLTFSIGNTMKRXXXXXXXXXXFHTPVQPVNALGAAIAILGTFIYSQAK 703
            K L PVAV H +GHV + VS + VAVSFTH +K+ EP F+   S+F+ G+++P+ +++SL P++ G ++A++TEL+FN +GF+ AMISN++F +R+I+             N YA +S+++L++  P A+ +EGP +   G+  AIA++G     + ++WV    +FYHLYNQV+  +L++++PLT ++GN +KR          F   +     +G  IAI G  +YS  K
Sbjct:  163 KLLIPVAVCHALGHVTSNVSFAAVAVSFTHTVKALEPFFNAAASQFILGQSIPITLWLSLAPVVIGVSMASLTELSFNWLGFISAMISNISFTYRSIY--SKKAMTDMDSTNIYAYISIIALIVCIPPALIIEGPTLLKTGFNDAIAKVGLVKFVSDLFWV---GMFYHLYNQVATNTLERVAPLTHAVGNVLKRVFVIGFSIIIFGNKISTQTGIGTGIAIAGVALYSFIK 389          
BLAST of CX296421 vs. ExPASy Swiss-Prot
Match: TPT_FLATR (Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria trinervia GN=TPT PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.851e-44
Identity = 92/237 (38.82%), Postives = 146/237 (61.60%), Query Frame = 2
Query:    5 DLEFWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFXXXXXXXXXXXXXNYYACLSMMSLLILTPFAIAVEGPQMWAAGWQKAIAQIGP----NFVWWVAAQSIFYHLYNQVSYMSLDQISPLTFSIGNTMKRXXXXXXXXXXFHTPVQPVNALGAAIAILGTFIYSQAK 703
            D    K L PV   H +GHV + VS + VAVSFTH IK+ EP F+   S+F+ G+++P+ +++SL P++ G ++A++TEL+FN +GF+ AMISN++F +R+I+             N YA +S+++LL   P A+  EGPQ+   G+  AIA++G     + ++WV    +FYHLYNQ++  +L++++PLT ++GN +KR          F   +    A+G +IAI G  IYS  K
Sbjct:  163 DSNILKLLIPVGFCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFVLGQSIPISLWLSLAPVVIGVSMASLTELSFNWLGFISAMISNISFTYRSIY--SKKAMTDMDSTNLYAYISIIALLFCIPPAVLFEGPQLLKHGFNDAIAKVGMIKFISDLFWV---GMFYHLYNQIATNTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNKISTQTAIGTSIAIAGVAIYSLIK 394          
BLAST of CX296421 vs. ExPASy Swiss-Prot
Match: TPT_MAIZE (Triose phosphate/phosphate translocator, chloroplastic OS=Zea mays GN=TPT PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.647e-43
Identity = 88/229 (38.43%), Postives = 142/229 (62.01%), Query Frame = 2
Query:   20 KSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFXXXXXXXXXXXXXNYYACLSMMSLLILTPFAIAVEGPQMWAAGWQKAIAQIG-PNFVWWVAAQSIFYHLYNQVSYMSLDQISPLTFSIGNTMKRXXXXXXXXXXFHTPVQPVNALGAAIAILGTFIYSQAK 703
            K LFPVA+ H IGH+ + VS + VAVSF H IK+ EP FS   ++F+ G+ +P  +++SL P++ G ++A++TEL+FN  GF+ AMISN++F +R+I+             N YA +S+++L++  P A+  EGP++   G+  AIA++G   FV  +    +FYHLYNQ++  +L++++PLT ++GN +KR          F   +     +G +IAI G  +YS  K
Sbjct:  171 KLLFPVALCHGIGHITSNVSFAAVAVSFAHTIKALEPFFSAAATQFILGQQVPFSLWLSLAPVVIGVSMASLTELSFNWTGFINAMISNISFTYRSIY--SKKAMTDMDSTNVYAYISIIALIVCIPPALIFEGPKLMQHGFSDAIAKVGLTKFVSDLFLVGLFYHLYNQIATNTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNKISTQTGIGTSIAIAGVAMYSYIK 397          
BLAST of CX296421 vs. ExPASy Swiss-Prot
Match: TPT_SOLTU (Triose phosphate/phosphate translocator, chloroplastic OS=Solanum tuberosum GN=TPT PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.134e-42
Identity = 90/229 (39.30%), Postives = 140/229 (61.14%), Query Frame = 2
Query:   20 KSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFXXXXXXXXXXXXXNYYACLSMMSLLILTPFAIAVEGPQMWAAGWQKAIAQIG-PNFVWWVAAQSIFYHLYNQVSYMSLDQISPLTFSIGNTMKRXXXXXXXXXXFHTPVQPVNALGAAIAILGTFIYSQAK 703
            K L PVA  H +GHV + VS + V VSFTH +K+ EP F+   S+F+ G+ +P+ +++SL P++ G ++A++TEL+FN +GF  AMISN++F +R+I+             N YA +S+++L+   P AI +EGPQ+   G+  AIA++G   FV  +    +FYHLYNQV+  +L++++PLT ++GN +KR          F   +     +G  IAI G  IYS  K
Sbjct:  175 KLLTPVAFCHALGHVTSNVSFAAVRVSFTHTVKALEPFFNAAASQFILGQQIPLALWLSLAPVVLGVSMASLTELSFNWLGFTSAMISNISFTYRSIY--SKKAMTDMDSTNVYAYISIIALIFCLPPAIFIEGPQLLQHGFNDAIAKVGLTKFVTDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKRVFVIGFSIVIFGNKISTQTGIGTCIAIAGVAIYSFIK 401          
BLAST of CX296421 vs. ExPASy Swiss-Prot
Match: TPT2_BRAOB (Triose phosphate/phosphate translocator, non-green plastid, chloroplastic OS=Brassica oleracea var. botrytis GN=NGTPT PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.932e-39
Identity = 89/230 (38.70%), Postives = 133/230 (57.83%), Query Frame = 2
Query:   23 SLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFXXXXXXXXXXXXXN--YYACLSMMSLLILTPFAIAVEGPQMWAAGWQKAIAQIGPNFVWWVAAQSIFYHLYNQVSYMSLDQISPLTFSIGNTMKRXXXXXXXXXXFHTPVQPVNALGAAIAILGTFIYSQAKQ 706
            ++ P+AV HT+G++   +S+ KV+VSFTH IK+ EP FSV++S    GE     V  S++PI+GG ALA+VTE++FN  GF+ AM SNL    RN+              N   ++ +++MSL ++ P     EG +   +  Q A   +   +   + A ++ +H Y QVSYM L ++SP+T S+GN +KR          F TPV PVNA G  IA+ G F+YS+ K+
Sbjct:  166 AILPLAVVHTLGNLFTNMSLGKVSVSFTHTIKAMEPFFSVVLSAMFLGEVPTPWVIGSIIPIVGGVALASVTEVSFNWAGFLSAMASNLTNQSRNVLSKKVMVKKDDSLDNITLFSIITLMSLFLMAPVTFFSEGIKFTPSYIQSAGVNVQQIYTKSLIA-ALCFHAYQQVSYMILARVSPVTHSVGNCVKRVVVIVSSVIFFKTPVSPVNAFGTGIALAGVFLYSRVKR 394          
The following BLAST results are available for this feature:
BLAST of CX296421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GPT2_ARATH2.242e-10781.20Glucose-6-phosphate/phosphate translocator 2, chlo... [more]
GPT1_ARATH1.152e-10379.40Glucose-6-phosphate/phosphate translocator 1, chlo... [more]
TPT_FLAPR3.188e-4540.08Triose phosphate/phosphate translocator, chloropla... [more]
TPT_SPIOL4.163e-4540.08Triose phosphate/phosphate translocator, chloropla... [more]
TPT1_BRAOB4.163e-4541.38Triose phosphate/phosphate translocator, chloropla... [more]
TPT_PEA7.851e-4438.36Triose phosphate/phosphate translocator, chloropla... [more]
TPT_FLATR7.851e-4438.82Triose phosphate/phosphate translocator, chloropla... [more]
TPT_MAIZE6.647e-4338.43Triose phosphate/phosphate translocator, chloropla... [more]
TPT_SOLTU1.134e-4239.30Triose phosphate/phosphate translocator, chloropla... [more]
TPT2_BRAOB9.932e-3938.70Triose phosphate/phosphate translocator, non-green... [more]

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Properties
Property NameValue
Genbank descriptionC05140F06SK FerrChloL1 Citrus clementina cDNA clone C05140F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296421 ID=CX296421; Name=CX296421; organism=Citrus clementina; type=EST; length=718bp
AGGCGATCTTGAGTTCTGGAAGAGTTTGTTTCCTGTTGCAGTGGCACATA
CAATTGGGCATGTAGCAGCAACCGTAAGTATGTCAAAAGTTGCAGTTTCA
TTCACTCACATCATCAAGAGTGGTGAGCCTGCATTCAGTGTATTGGTTTC
AAGGTTCTTGTTCGGTGAGACACTTCCCATGCCGGTTTATATGTCACTCC
TGCCGATTATTGGAGGCTGTGCCCTTGCTGCTGTTACAGAGCTCAACTTC
AACATGATTGGATTTATGGGAGCTATGATATCGAATTTGGCATTCGTGTT
TCGGAACATTTTCTCCAAGAAAGGGATGAAGGGAAAGTCTGTTGGTGGGA
TGAACTATTATGCTTGTTTGTCTATGATGTCTCTTTTGATTCTCACACCA
TTTGCAATTGCTGTGGAGGGCCCTCAGATGTGGGCTGCTGGCTGGCAAAA
GGCTATTGCTCAAATTGGTCCCAACTTTGTGTGGTGGGTAGCGGCACAGA
GTATCTTCTATCACTTGTACAACCAAGTTTCATACATGTCTCTCGATCAA
ATTTCTCCATTGACATTCAGCATTGGCAACACAATGAAGCGAATCTCTGT
CATAGTCTCCTCCATCATCATCTTCCACACGCCAGTTCAACCCGTCAATG
CTCTTGGAGCCGCCATTGCAATACTCGGCACCTTCATCTATTCACAGGCA
AAGCAGTGAACGTGTGAA
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