CX296424

Overview
NameCX296424
Unique NameCX296424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15331 contig Ccv1_Contig15331:498..1185. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.468e-28
Identity = 71/143 (49.65%), Postives = 88/143 (61.54%), Query Frame = -2
Query:  243 ESEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRD-CESEEEERKAKVVKTESADT-VNEFPLTPASCAAFWDLHLDWDCGV 665
            E++++HYRGVRRRPWGKYAAEIRDP ++GVRVWLGTFDT           AF+LRGSKAILNFPLEAGK +       +   + +  + + KRKR   E E +    K VK E A    +  PLTP+S   FWD     D G+
Sbjct:   66 ENDQRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLEAGKHE-------DLGDNKKTISLKAKRKRQVTEDESQLISRKAVKREEAQVQADACPLTPSSWKGFWDGADSKDMGI 201          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.169e-27
Identity = 69/143 (48.25%), Postives = 79/143 (55.24%), Query Frame = -2
Query:  267 ESEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEEERKAKVVKTE----------SADTVNEFPLTPASCAAFWDL 665
            E EE+HYRGVRRRPWGKYAAEIRDP ++G R+WLGT+DT           AFQLRG KAILNFPL+          +  C      G    KRKRD  S  EE KA  VK E           A+     PLTP+S   FWD+
Sbjct:   82 EEEERHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPLDV------RVTSETCSGEGVIGL--GKRKRDKGSPPEEEKAARVKVEEEESNTSETTEAEVEPVVPLTPSSWMGFWDV 216          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.774e-25
Identity = 69/138 (50.00%), Postives = 80/138 (57.97%), Query Frame = -2
Query:  252 ESEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEEERKAKVVKTESADTVNEFPLTPASCAAFWDLHLDWD 665
            E E+KHYRGVR+RPWGK+AAEIRDP +RG RVWLGTFDT           AF+LRGSKAILNFPLE GK                A   E KRKRD + E+     KV+KTE +  VN     P   +   +L  DWD
Sbjct:  150 EEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVGKW------------KPRADEGEKKRKRD-DDEKVTVVEKVLKTEQSVDVNGGETFPFVTSNLTEL-CDWD 273          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.541e-25
Identity = 67/133 (50.38%), Postives = 77/133 (57.89%), Query Frame = -2
Query:  267 EEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEEERKAKVVKTESADTVNEFPLTPASCAAF--WDL 659
            E++HYRGVR RPWGK+AAEIRDPTRRG RVWLGTF+T           AF+LRGSKAILNFPLE  K +  A   R             KRKRD E EE     KV+KTE +  V+      +   A   WDL
Sbjct:  133 EKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLEVDKWNPRAEDGR---------GLYNKRKRDGEEEEVTVVEKVLKTEESYDVSGGENVESGLTAIDDWDL 256          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.849e-25
Identity = 64/131 (48.85%), Postives = 80/131 (61.07%), Query Frame = -2
Query:  270 SEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEEERKAKVVKTESADTVNEFPLTPASCAAFWD 662
            +E+KHYRGVR+RPWGK+AAEIRDP R+G RVWLGTFDT           AF+LRGSKAI+NFPLE       A   ++ +   +      KR R+ E+EE   K K VK E        PLTP+S +A W+
Sbjct:  140 TEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFPLEV------ANFKQQDNEILQPANSGRKRMRETENEEIVIK-KEVKREERVPAAAAPLTPSSWSAIWE 263          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.866e-24
Identity = 65/133 (48.87%), Postives = 83/133 (62.41%), Query Frame = -2
Query:  270 SEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLEAG--KCDSNAAVARECDSSAEAGACETKRKRDCESEEEERKAKVVKTESADTVNEFPLTPASCAAFWD 662
            +E+KHYRGVR+RPWGK+AAEIRDP R+G RVWLGTFDT           A++LRGSKAI+NFPLE    K + N  +    +SS        KR R+  +EE+    K +K E  + V   PLTP+S +A WD
Sbjct:  133 TEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFPLEVANFKQEFNNEIRPLVNSS-------RKRVRETVNEEQLVINKEMKIEE-ERVPTAPLTPSSWSAIWD 257          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 53/115 (46.09%), Postives = 68/115 (59.13%), Query Frame = -2
Query:  321 ESEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEEERKAKVVKTESAD 665
            E + +HYRGVRRRPWGK+AAEIRDP ++G R+WLGTF++           AF+LRG KA+LNFPL+AGK ++ A   R             KRKR    EE +R      + S D
Sbjct:  104 EVDARHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPANSGR-------------KRKRSDVHEELQRTQSNSSSSSCD 205          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.304e-20
Identity = 47/94 (50.00%), Postives = 60/94 (63.83%), Query Frame = -2
Query:  378 EEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRD 659
            E +HYRGVRRRPWGK+AAEIRDP ++G R+WLGTF++           AF+LRG KA+LNFPL+AGK D            A   +C  +R+ D
Sbjct:  103 ETRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPLDAGKYD------------APVNSCRKRRRTD 184          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.076e-19
Identity = 53/126 (42.06%), Postives = 72/126 (57.14%), Query Frame = -2
Query:  288 ESEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEEERKAKVVKTESADTVNEFPLTPAS 665
            E EEK YRGVR+RPWGK+AAEIRD TR+G+RVWLGTFDT           AF L+GS A+LNFP +  + +S   +     +  E+     KRK    +    +K    K+ S+ T+   P + +S
Sbjct:   76 EEEEKSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFPADVVE-ESLRKMENVNLNDGESPVIALKRKHSMRNRPRGKK----KSSSSSTLTSSPSSSSS 196          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.076e-19
Identity = 52/119 (43.70%), Postives = 70/119 (58.82%), Query Frame = -2
Query:  321 KHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPL--EAGKCDSNAAVARECDSSAEAGACET------KRKRDCESEEEERKAKVVKTESAD 653
            KHYRGVR+RPWGK+AAEIRDP + G RVWLGTF+T           AF++RGS+A+LNFPL   +G+ D     ++   SS+ + +  T      K KR  ++E    +   VK E  D
Sbjct:  115 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLRVNSGEPDPVRITSKRSSSSSSSSSSSTSSSENGKLKRRRKAENLTSEVVQVKCEVGD 233          
The following BLAST results are available for this feature:
BLAST of CX296424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
EF105_ARATH1.468e-2849.65Ethylene-responsive transcription factor ERF105 OS... [more]
EF104_ARATH6.169e-2748.25Ethylene-responsive transcription factor ERF104 OS... [more]
EF102_ARATH5.774e-2550.00Ethylene-responsive transcription factor 5 OS=Arab... [more]
EF103_ARATH7.541e-2550.38Ethylene-responsive transcription factor 6 OS=Arab... [more]
ERF5_TOBAC9.849e-2548.85Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF5_NICSY2.866e-2448.87Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF106_ARATH1.922e-2046.09Ethylene-responsive transcription factor ERF106 OS... [more]
EF107_ARATH7.304e-2050.00Ethylene-responsive transcription factor ERF107 OS... [more]
ERF94_ARATH8.076e-1942.06Ethylene-responsive transcription factor ERF094 OS... [more]
EF101_ARATH8.076e-1943.70Ethylene-responsive transcription factor 2 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionC05140G04SK FerrChloL1 Citrus clementina cDNA clone C05140G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296424 ID=CX296424; Name=CX296424; organism=Citrus clementina; type=EST; length=687bp
AGGTTTTTTTTTTTTTTTTTTTTTTTAGAATAAAATCAATCAACTCATTT
TTTAAGCTCCAAGAATTAATCAAAAAGTAATTTTATTTTTCAAAAAGATT
TATATGTGCATGTGCAATCCGAAAGCTCCACGTCAGACATAATACCCGCC
ACGCCAATTATACTACTCAAAGTCAAAAGTCAAAGAACCATCAACGGTTG
AGGCGATAACGGCGACAGTAGAGGGGCGTTGAATATCCCTTTCACACCAC
AGTCCCAGTCCAAATGCAAGTCCCAAAACGCCGCGCAACTCGCCGGCGTC
AAAGGAAATTCATTAACTGTATCCGCAGACTCCGTTTTCACCACCTTGGC
TTTTCTCTCCTCTTCTTCGCTTTCACAGTCCCTCTTCCGTTTCGTTTCAC
ACGCGCCAGCCTCGGCGCTCGAGTCACACTCTCTAGCCACCGCAGCGTTT
GAGTCGCACTTGCCGGCTTCAAGAGGAAAGTTGAGGATCGCTTTCGAGCC
GCGCAGCTGGAAAGCGGCACGGTCGTACGCCCTAGCTGCTTCAATGGCCG
TGTCAAATGTCCCCAGCCAGACACGTACGCCTCTCCGGGTAGGATCTCGG
ATCTCGGCCGCGTACTTTCCCCACGGCCTCCGTCGAACTCCTCTGTAATG
CTTTTCTTCCGACTCTCAGGTTTGGCCTTGCTTTTCC
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