CX296426

Overview
NameCX296426
Unique NameCX296426
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length401
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296426 vs. ExPASy Swiss-Prot
Match: SF3BB_ARATH (Uncharacterized protein At4g14342 OS=Arabidopsis thaliana GN=At4g14342 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.398e-39
Identity = 73/78 (93.59%), Postives = 77/78 (98.72%), Query Frame = 1
Query:   13 NSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 246
            NSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASYIGHYPML+YFAIAENESIGRE YNFMQKMLLPCGLPPERE++
Sbjct:   10 NSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREEE 87          
BLAST of CX296426 vs. ExPASy Swiss-Prot
Match: SF3BA_ARATH (Uncharacterized protein At3g23325 OS=Arabidopsis thaliana GN=At3g23325 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.398e-39
Identity = 73/78 (93.59%), Postives = 76/78 (97.44%), Query Frame = 1
Query:   13 NSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 246
            NSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASYIGHYPML+YFAIAENESIGRE YNFMQKMLLPCGLPPERED+
Sbjct:   10 NSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE 87          
BLAST of CX296426 vs. ExPASy Swiss-Prot
Match: SF3B5_DROME (Probable splicing factor 3B subunit 5 OS=Drosophila melanogaster GN=CG11985 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.867e-25
Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = 1
Query:   13 NSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 246
            +SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY +L YFAIAENES  R  +N M++ML PCG PPE+ +D
Sbjct:    8 HSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKARVRFNLMERMLQPCGPPPEKLED 85          
BLAST of CX296426 vs. ExPASy Swiss-Prot
Match: SF3B5_HUMAN (Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF3B5 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.916e-24
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 1
Query:   13 NSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 246
            +SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+KML PCG P ++ ++
Sbjct:    8 HSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85          
BLAST of CX296426 vs. ExPASy Swiss-Prot
Match: SF3B5_BOVIN (Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B5 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.916e-24
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 1
Query:   13 NSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 246
            +SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+KML PCG P ++ ++
Sbjct:    8 HSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85          
BLAST of CX296426 vs. ExPASy Swiss-Prot
Match: SF3B5_MOUSE (Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf3b5 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.432e-22
Identity = 46/78 (58.97%), Postives = 60/78 (76.92%), Query Frame = 1
Query:   13 NSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 246
            +SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+KML P G P ++ ++
Sbjct:    8 HSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPSGPPADKPEE 85          
BLAST of CX296426 vs. ExPASy Swiss-Prot
Match: SF3B5_DICDI (Splicing factor 3B subunit 5 OS=Dictyostelium discoideum GN=sf3b5 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.583e-21
Identity = 45/78 (57.69%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   13 NSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 246
            NSQLEHLQ +YVGTGHAD+++ EW  N  RDS +S+IGH   L+ F+IAENES+GR  YN + KM+ PCG  P+ +D+
Sbjct:    8 NSQLEHLQMRYVGTGHADISKHEWLTNQHRDSLSSFIGHSSFLSLFSIAENESVGRVRYNTLTKMISPCGPAPKIKDN 85          
BLAST of CX296426 vs. ExPASy Swiss-Prot
Match: YHV5_SCHPO (Uncharacterized protein C211.05 OS=Schizosaccharomyces pombe GN=SPBC211.05 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.454e-14
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 1
Query:   16 SQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPP 231
            ++LE LQA+YVG G+A   ++EW VN  RD+ +S +GH P+LAY A A  E   +   N ++KM++PCG PP
Sbjct:    9 AKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEPRVQVRKNLLEKMIMPCGPPP 80          
The following BLAST results are available for this feature:
BLAST of CX296426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SF3BB_ARATH6.398e-3993.59Uncharacterized protein At4g14342 OS=Arabidopsis t... [more]
SF3BA_ARATH6.398e-3993.59Uncharacterized protein At3g23325 OS=Arabidopsis t... [more]
SF3B5_DROME6.867e-2564.10Probable splicing factor 3B subunit 5 OS=Drosophil... [more]
SF3B5_HUMAN9.916e-2460.26Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF... [more]
SF3B5_BOVIN9.916e-2460.26Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B... [more]
SF3B5_MOUSE1.432e-2258.97Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf... [more]
SF3B5_DICDI1.583e-2157.69Splicing factor 3B subunit 5 OS=Dictyostelium disc... [more]
YHV5_SCHPO5.454e-1447.22Uncharacterized protein C211.05 OS=Schizosaccharom... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05140G09SK FerrChloL1 Citrus clementina cDNA clone C05140G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296426 ID=CX296426; Name=CX296426; organism=Citrus clementina; type=EST; length=401bp
GAGGGTTTATATAACTCCCAGCTAGAGCATCTGCAAGCCAAATACGTTGG
TACTGGCCATGCTGATTTGAACAGATTTGAATGGGCTGTGAACATTCAGC
GTGATAGCTATGCCTCGTATATTGGGCATTACCCTATGTTGGCCTATTTT
GCTATTGCCGAGAATGAATCTATTGGAAGGGAACACTATAACTTTATGCA
GAAAATGCTTTTGCCTTGCGGCTTACCCCCTGAAAGAGAAGATGATTGAG
AGTTTAGGATGCCCTTTCTGAGAAATGAAACATTTTGGGCTCCAGCTCTC
TCCAGGCTGAGGAGCATTTGTGATATATCTAGGTGTTCACTTCAAGGAAC
AATGTTCATGTGACACTGACAAAACTGTGTAGTAGTGTGTACTGAAATGA
A
back to top