CX296432

Overview
NameCX296432
Unique NameCX296432
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296432 vs. ExPASy Swiss-Prot
Match: BH121_ARATH (Transcription factor bHLH121 OS=Arabidopsis thaliana GN=BHLH121 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.701e-18
Identity = 56/148 (37.84%), Postives = 76/148 (51.35%), Query Frame = -1
Query:  228 HAAIP---HVGNQNPGVIPNPCSTFVPYMAPNTLVEXXXXXXXXXXXXXSGRSQGSAKEDSGNKSSGESKIEKNEDSNNVTTDLELKTPGSTTDQDLPSGQRKSKKSLRKENSFT---NGXXXXXXXXXXXXXXXXXXSVAGGRKADD 653
            H ++P   + GNQNP +IP PC T++PYM PNT+VE               ++ G+   +   K S ES+ EK EDSN V T LELKTPGST+D+D      K+K+  R  N+ +   +                   SVAGG+K DD
Sbjct:  196 HPSMPSYTYFGNQNPSMIPAPCPTYMPYMPPNTVVEQQSVHIP--------QNPGNRSREPRAKVSRESRSEKAEDSNEVATQLELKTPGSTSDKDTLQRPEKTKRCKRNNNNNSIEESSHSSKCSSSPSVRDHSSSSSVAGGQKPDD 335          

HSP 2 Score: 22.7126 bits (47), Expect = 4.701e-18
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = -2
Query:  641 GAIPMHPPMQPY 676
            G+IPMHP M  Y
Sbjct:  191 GSIPMHPSMPSY 202          
The following BLAST results are available for this feature:
BLAST of CX296432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BH121_ARATH4.701e-1837.84Transcription factor bHLH121 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC05140H03SK FerrChloL1 Citrus clementina cDNA clone C05140H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296432 ID=CX296432; Name=CX296432; organism=Citrus clementina; type=EST; length=677bp
CGGCAGAGGAATAGAGACTGCCTAGGCTGCTCTAGTCGCTTTGAATGGAA
AATTTATGCTAGGAAAACAGACGTACATGATTTTCCGAATTACTTTATAA
AAAAAAATTCGGAATTTCGAATGACTTAAAAGTCCCTTTGCTATAATGTT
TTCTTCTCAAAGAATTTTCAAATCAGCAACGGCCTATTTGGAACAGCTGG
TGCCTCTTTATTAACTTTTTATCCTAAATCATCAGCCTTTCTGCCACCAG
CTACGCTATTTGATGAACTATCTTGTACACTACGAGAAGAGGAACACCTA
CTTGAGGAACTCCCATTGGTGAAACTATTCTCCTTCCTCAAGGACTTTTT
GGATTTTCTTTGTCCTGATGGAAGATCCTGATCTGTTGTCGATCCAGGAG
TTTTCAATTCTAGGTCAGTTGTGACATTGTTAGAGTCCTCATTCTTCTCA
ATCTTGCTCTCCCCTGATGACTTGTTTCCAGAATCTTCTTTAGCTGAACC
TTGGGACCTACCACTTGGCTGTGCAACTGCAGATGCATATTGTGCGGACT
GTTGTTCCACCAGTGTATTAGGAGCCATATACGGGACAAAAGTTGAACAG
GGGTTAGGAATGACCCCAGGATTCTGATTTCCAACATGGGGTATGGCTGC
ATGGGCGGATGCATGGGTATCGCCCCA
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