CX296440

Overview
NameCX296440
Unique NameCX296440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length641
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig808 contig Ccv1_Contig808:16..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296440 vs. ExPASy Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 8.906e-54
Identity = 113/174 (64.94%), Postives = 129/174 (74.14%), Query Frame = -2
Query:   89 MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESRGTDGRRXXXXXXXXXXXXXXXXXXXXXXAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 598
            MAAMNSSVL C+YAI+GS GS ELN K+  V++    G K    MPVI+AQ+V V  +  G++GRR                       GVIDEYLERSK NKELND+KRLATSGANFARA+TVQFG+CKFPENFTGCQDLAKQKKVPFIS+D+ LEC+GKDKYKCGSNVFWKW
Sbjct:    1 MAAMNSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVDGSNGRRSAMVFLAATLFSTAAVSASANA-GVIDEYLERSKTNKELNDKKRLATSGANFARAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171          
BLAST of CX296440 vs. ExPASy Swiss-Prot
Match: PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.604e-40
Identity = 72/84 (85.71%), Postives = 82/84 (97.62%), Query Frame = -2
Query:   89 VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 340
            + DEYLE+SKANKELND+KRLATSGANFARAYTV+FG+C+FP NFTGCQDLAKQKKVPFISDDLE+EC+GK+K+KCGSNVFWKW
Sbjct:   29 IFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112          
BLAST of CX296440 vs. ExPASy Swiss-Prot
Match: PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.130e-39
Identity = 72/84 (85.71%), Postives = 80/84 (95.24%), Query Frame = -2
Query:   89 VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 340
            V DEYLE+SK NKELND+KR ATSGANFARAYTVQFG+CKFP NFTGCQDLAKQKKVPFI+DDLE+EC+GK+K+KCGSNVFWKW
Sbjct:   62 VFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFITDDLEIECEGKEKFKCGSNVFWKW 145          
BLAST of CX296440 vs. ExPASy Swiss-Prot
Match: PSAN_VOLCA (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.298e-20
Identity = 46/79 (58.23%), Postives = 62/79 (78.48%), Query Frame = -2
Query:  107 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGS 343
            GV+++ L +S ANK LN++KRLATS AN AR+ TV  GTC+FPENF GC++LA  K V +I++DL++EC+GKD   CGS
Sbjct:   54 GVVEDLLAKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYIAEDLKIECEGKDAKSCGS 132          
The following BLAST results are available for this feature:
BLAST of CX296440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAN_ARATH8.906e-5464.94Photosystem I reaction center subunit N, chloropla... [more]
PSAN_MAIZE5.604e-4085.71Photosystem I reaction center subunit N, chloropla... [more]
PSAN_HORVU2.130e-3985.71Photosystem I reaction center subunit N, chloropla... [more]
PSAN_VOLCA1.298e-2058.23Photosystem I reaction center subunit N, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionC05141A06SK FerrChloL1 Citrus clementina cDNA clone C05141A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296440 ID=CX296440; Name=CX296440; organism=Citrus clementina; type=EST; length=641bp
GTAGCACAAGTAAAGCTTCTTCAATGGAAACTTAGATACATGGGGAGGGT
AAAATAAAATGTTTAAAGAGATCAGTTGTCCCACTTCACCATTTCCAGAA
AACATTGGAACCACACTTGTATTTATCTTTCCCTTTGCACTCCAATTCCA
AATCATCCGAGATGAATGGCACTTTCTTTTGCTTGGCAAGATCTTGGCAG
CCTGTGAAGTTCTCAGGGAACTTGCATGTGCCAAATTGAACAGTGTATGC
TCTGGCAAAGTTTGCACCACTTGTTGCCAATCTCTTCTGGTCATTCAATT
CCTTGTTGGCTTTGCTTCTCTCAAGGTATTCATCGATGACCCCAGCATTA
GCAGAAGAAGCAGCAGCAGTAGCTGTGGTGAAAAGGGTAACTGCTAGAAG
AGCCATGGCAGCTCTCCTTCCATCAGTTCCTCTTGATTCTTTTGAAACAT
CAACTTGTTGAGCTCTGATCACAGGCATTTTGTGGCCATGCACAGCCGGG
GTTGAAACCGAAACAATCTTTGCATTGAGCTCAGATGATCCAGCACTGCC
TGAAATGGCATAGTTGCATGCGAGTACACTAGAGTTCATGGCTGCCATCG
CTCCTGCCTCGTGCCGAATTCGGCACGAGGGGGGGCCCGGT
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