CX296454

Overview
NameCX296454
Unique NameCX296454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length429
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3690 contig Ccv1_Contig3690:373..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGS2_VICFA (Glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic OS=Vicia faba GN=AGPP PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 2.913e-61
Identity = 114/122 (93.44%), Postives = 121/122 (99.18%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKG VPIGIGKNSHI+RAIIDKNARIGD+VKI+NSD+VQEAARET+GYFIKSGIVT+IKDALIPSGT+I
Sbjct:  391 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGGVPIGIGKNSHIRRAIIDKNARIGDDVKIINSDNVQEAARETEGYFIKSGIVTVIKDALIPSGTVI 512          
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGS_BRANA (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Brassica napus GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 3.220e-60
Identity = 111/122 (90.98%), Postives = 120/122 (98.36%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            DSVIGEGCVIKNCKIHHSV+GLRSCISEGAIIEDTLLMGADYYETDADR  LAAKGS+PIGIG++SHIKRAIIDKNARIGDNVKI+N+D+VQEAARETDGYFIKSGIVT+IKDALIPSGT+I
Sbjct:  399 DSVIGEGCVIKNCKIHHSVIGLRSCISEGAIIEDTLLMGADYYETDADRTLLAAKGSIPIGIGRDSHIKRAIIDKNARIGDNVKIINTDNVQEAARETDGYFIKSGIVTVIKDALIPSGTVI 520          
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGS1_VICFA (Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic OS=Vicia faba GN=AGPC PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 4.206e-60
Identity = 112/122 (91.80%), Postives = 121/122 (99.18%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            DSVIGEGCVIKNCKI HSVVGLRSCISEGAIIEDTLLMGADYYET+AD+RFLAAKGSVPIGIGKNSHIKRAI+DKNARIG+NVKI+NSD+VQEAARET+GYFIKSGIVTIIKDALIPSGT++
Sbjct:  387 DSVIGEGCVIKNCKIFHSVVGLRSCISEGAIIEDTLLMGADYYETEADKRFLAAKGSVPIGIGKNSHIKRAIVDKNARIGENVKIINSDNVQEAARETEGYFIKSGIVTIIKDALIPSGTVL 508          
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGS_SOLTU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 5.493e-60
Identity = 113/122 (92.62%), Postives = 118/122 (96.72%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED+LLMGADYYETDADR+ LAAKGSVPIGIGKN HIKRAIIDKNARIGDNVKI+N D+VQEAARETDGYFIKSGIVT+IKDALIPSG II
Sbjct:  400 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 521          
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGS_WHEAT (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-S PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 1.767e-58
Identity = 108/122 (88.52%), Postives = 117/122 (95.90%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYET+AD++ LA KG +PIGIGKNSHIKRAIIDKNARIGDNV I+N D+VQEAARETDGYFIKSGIVT+IKDAL+PSGT+I
Sbjct:  352 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETEADKKLLAEKGGIPIGIGKNSHIKRAIIDKNARIGDNVMIINVDNVQEAARETDGYFIKSGIVTVIKDALLPSGTVI 473          
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGS_HORVU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 1.767e-58
Identity = 108/122 (88.52%), Postives = 117/122 (95.90%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYET+AD++ LA KG +PIGIGKNSHIKRAIIDKNARIGDNV I+N D+VQEAARETDGYFIKSGIVT+IKDAL+PSGT+I
Sbjct:  392 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETEADKKLLAEKGGIPIGIGKNSHIKRAIIDKNARIGDNVMIINVDNVQEAARETDGYFIKSGIVTVIKDALLPSGTVI 513          
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGS_ARATH (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Arabidopsis thaliana GN=APS1 PE=2 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 2.308e-58
Identity = 109/122 (89.34%), Postives = 118/122 (96.72%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED+LLMGADYYET  ++  L+AKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI+NSD+VQEAARETDGYFIKSGIVT+IKDALIP+GT+I
Sbjct:  399 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETATEKSLLSAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIINSDNVQEAARETDGYFIKSGIVTVIKDALIPTGTVI 520          
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGS_SOLLC (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 1.496e-57
Identity = 109/122 (89.34%), Postives = 116/122 (95.08%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED+LLMGADYYETDA+R+ LAAKGSVPIGIGKN   KRAIIDKNARIGDNVKI+N D+VQEAARETDGYFIKSGIVT+IKDALIPSG +I
Sbjct:  400 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDAERKLLAAKGSVPIGIGKNCLYKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIVI 521          
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGS_ORYSJ (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=AGPS PE=2 SV=4)

HSP 1 Score: 220.32 bits (560), Expect = 2.552e-57
Identity = 105/122 (86.07%), Postives = 116/122 (95.08%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED+LLMGADYYET+AD++ L  KG +PIGIGKN HI+RAIIDKNARIGDNVKI+N D+VQEAARETDGYFIKSGIVT+IKDAL+PSGT+I
Sbjct:  393 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETEADKKLLGEKGGIPIGIGKNCHIRRAIIDKNARIGDNVKIINVDNVQEAARETDGYFIKSGIVTVIKDALLPSGTVI 514          
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGS_MAIZE (Glucose-1-phosphate adenylyltransferase small subunit (Fragment) OS=Zea mays GN=GLG1 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 3.684e-56
Identity = 105/123 (85.37%), Postives = 117/123 (95.12%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYY-ETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYY ET+AD++ LA  G +PIGIGKNSHI++AIIDKNARIGDNVKI+N+D+VQEAARETDGYFIK GIVT+IKDAL+PSGT+I
Sbjct:    3 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYAETEADKKLLAENGGIPIGIGKNSHIRKAIIDKNARIGDNVKILNADNVQEAARETDGYFIKGGIVTVIKDALLPSGTVI 125          
The following BLAST results are available for this feature:
BLAST of CX296454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
GLGS2_VICFA2.913e-6193.44Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_BRANA3.220e-6090.98Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS1_VICFA4.206e-6091.80Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_SOLTU5.493e-6092.62Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_WHEAT1.767e-5888.52Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_HORVU1.767e-5888.52Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_ARATH2.308e-5889.34Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_SOLLC1.496e-5789.34Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_ORYSJ2.552e-5786.07Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_MAIZE3.684e-5685.37Glucose-1-phosphate adenylyltransferase small subu... [more]

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Properties
Property NameValue
Genbank descriptionC05141C02SK FerrChloL1 Citrus clementina cDNA clone C05141C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296454 ID=CX296454; Name=CX296454; organism=Citrus clementina; type=EST; length=429bp
GAGGCTGATAGTGTAATTGGTGAAGGCTGTGTGATTAAGAATTGCAAAAT
TCACCATTCTGTTGTTGGGCTTCGATCTTGCATATCAGAAGGTGCAATTA
TCGAAGATACTTTACTTATGGGAGCAGATTATTATGAGACGGATGCGGAC
AGGAGGTTTTTGGCTGCAAAGGGTAGTGTTCCAATTGGTATTGGCAAGAA
TTCTCACATCAAGAGAGCAATAATCGACAAAAATGCTCGAATTGGGGATA
ATGTGAAGATCGTCAACAGTGACAGTGTGCAAGAAGCAGCAAGGGAAACA
GATGGATACTTCATCAAGAGCGGGATTGTCACAATAATCAAGGATGCCTT
GATTCCCAGTGGAACCATAATCTAAACTGTCGTCTTCTCTTCTCAGTTTC
ATCCCAAGCTACGGGCACCTTCCCCTCTA
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