CX296468

Overview
NameCX296468
Unique NameCX296468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_BRAJA (30S ribosomal protein S9 OS=Bradyrhizobium japonicum GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.202e-26
Identity = 62/104 (59.62%), Postives = 76/104 (73.08%), Query Frame = -2 
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            K+ VN +E +VYF     R  + +PFS  +  G +DV CTV GGG+SGQ GAVR GIS+AL  +EP+LR  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   56 KVTVNSREVEVYFARPVLRMMIEQPFSVAQRSGQYDVICTVAGGGLSGQAGAVRHGISKALTYFEPELRTVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 159
[Close]
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_RHORT (30S ribosomal protein S9 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rpsI PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.366e-26
Identity = 59/104 (56.73%), Postives = 76/104 (73.08%), Query Frame = -2 
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            +I VN +E + YFP    R  + +PF  T T   +DV CTV GGG+SGQ GA+R GISRAL  ++PD+RPAL++ GF+TRD R VERKK G+AKAR+SFQ+ KR
Sbjct:   55 RITVNGRELENYFPRPVLRMVINQPFVVTNTTNQFDVVCTVTGGGLSGQAGALRHGISRALTYFDPDMRPALKAEGFMTRDPRTVERKKYGRAKARRSFQFSKR 158
[Close]
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_RHOP2 (30S ribosomal protein S9 OS=Rhodopseudomonas palustris (strain HaA2) GN=rpsI PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.366e-26
Identity = 61/104 (58.65%), Postives = 74/104 (71.15%), Query Frame = -2 
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            K+ VN +E +VYF     R  + +P       G +DV CTV GGG+SGQ GAVR GIS+AL N+EP+LR  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   55 KVIVNSREVEVYFARPVLRMMIQQPLVAAARAGQYDVICTVAGGGLSGQAGAVRHGISKALTNFEPELRGVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 158
[Close]
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_RHOPT (30S ribosomal protein S9 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.093e-25
Identity = 61/104 (58.65%), Postives = 73/104 (70.19%), Query Frame = -2 
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            KI VN +E + YF     R  + +P       G +DV CTV GGG+SGQ GAVR GIS+AL N+EP+LR  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   57 KITVNSREVETYFARPVLRMMIQQPLVAAARAGQYDVICTVAGGGLSGQAGAVRHGISKALTNFEPELRSVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 160
[Close]
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_RHOPS (30S ribosomal protein S9 OS=Rhodopseudomonas palustris (strain BisB5) GN=rpsI PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.093e-25
Identity = 61/104 (58.65%), Postives = 74/104 (71.15%), Query Frame = -2 
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            K+ VN +E +VYF     R  + +P       G +DV CTV GGG+SGQ GAVR GIS+AL N+EP+LR  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   55 KVTVNAREVEVYFARPVLRMMIQQPLVAAARAGQYDVICTVAGGGLSGQAGAVRHGISKALTNFEPELRGVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 158
[Close]
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_RHOPA (30S ribosomal protein S9 OS=Rhodopseudomonas palustris GN=rpsI PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.093e-25
Identity = 61/104 (58.65%), Postives = 73/104 (70.19%), Query Frame = -2 
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            KI VN +E + YF     R  + +P       G +DV CTV GGG+SGQ GAVR GIS+AL N+EP+LR  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   57 KITVNSREVETYFARPVLRMMIQQPLVAAARAGQYDVICTVAGGGLSGQAGAVRHGISKALTNFEPELRSVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 160
[Close]
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_XANP2 (30S ribosomal protein S9 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpsI PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.427e-25
Identity = 58/104 (55.77%), Postives = 75/104 (72.12%), Query Frame = -2 
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            K+ +ND++ +VYF     R  + +PF      G +DV CTV GGG+SGQ GAVR GIS+AL  +EP+LR  L+  GF+TRDSRVVERKK G+AKAR+SFQ+ KR
Sbjct:   57 KVTINDRDIEVYFARPVLRLMINQPFQAAAREGQYDVVCTVSGGGLSGQAGAVRHGISKALTYYEPELRSPLKKGGFITRDSRVVERKKYGRAKARRSFQFSKR 160
[Close]
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_RHOS5 (30S ribosomal protein S9 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpsI PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.864e-25
Identity = 62/104 (59.62%), Postives = 75/104 (72.12%), Query Frame = -2 
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            K+ VN K  D YF     +  L +PF+     G +DV  TV GGG+SGQ GAV+ GIS+ALQ +EP LR AL++AGFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   57 KVTVNGKPMDEYFARPVLQMILRQPFTVANVTGQFDVMATVAGGGLSGQAGAVKHGISKALQLYEPSLRAALKAAGFLTRDSRVVERKKYGKAKARRSFQFSKR 160
[Close]
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_OENOB (30S ribosomal protein S9 OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.864e-25
Identity = 57/104 (54.81%), Postives = 76/104 (73.08%), Query Frame = -2 
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            KI +N++ F+ Y P  + RA +++PF+ T T G +DV+  V GGG +GQ GA R GI+RAL   +PD RPAL+SAG LTRDSR+VERKKPG  KAR++ Q+ KR
Sbjct:   27 KITINNRSFEEYIPAANLRAVVIQPFAVTSTDGTYDVNVNVVGGGFAGQAGATRHGIARALLQVDPDFRPALKSAGLLTRDSRMVERKKPGLKKARRASQFSKR 130
[Close]
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_NITHX (30S ribosomal protein S9 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rpsI PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.864e-25
Identity = 61/104 (58.65%), Postives = 74/104 (71.15%), Query Frame = -2 
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            KI VN +E +VYF     R  + +P       G +DV CTV GGG+SGQ GAVR G+S+AL N+EP+LR  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   55 KILVNAREVEVYFARPVLRMMIQQPLVAAARAGQYDVVCTVAGGGLSGQAGAVRHGLSKALTNFEPELRGVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 158
The following BLAST results are available for this feature:
BLAST of CX296468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_BRAJA2.202e-2659.6230S ribosomal protein S9 OS=Bradyrhizobium japonic... [more]
RS9_RHORT8.366e-2656.7330S ribosomal protein S9 OS=Rhodospirillum rubrum ... [more]
RS9_RHOP28.366e-2658.6530S ribosomal protein S9 OS=Rhodopseudomonas palus... [more]
RS9_RHOPT1.093e-2558.6530S ribosomal protein S9 OS=Rhodopseudomonas palus... [more]
RS9_RHOPS1.093e-2558.6530S ribosomal protein S9 OS=Rhodopseudomonas palus... [more]
RS9_RHOPA1.093e-2558.6530S ribosomal protein S9 OS=Rhodopseudomonas palus... [more]
RS9_XANP21.427e-2555.7730S ribosomal protein S9 OS=Xanthobacter autotroph... [more]
RS9_RHOS51.864e-2559.6230S ribosomal protein S9 OS=Rhodobacter sphaeroide... [more]
RS9_OENOB1.864e-2554.8130S ribosomal protein S9 OS=Oenococcus oeni (strai... [more]
RS9_NITHX1.864e-2558.6530S ribosomal protein S9 OS=Nitrobacter hamburgens... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05141D11SK FerrChloL1 Citrus clementina cDNA clone C05141D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296468 ID=CX296468; Name=CX296468; organism=Citrus clementina; type=EST; length=666bp
CAATCCTAATACTGTACGATCGTCCTTAAAGCGAAGACATTACAGTACTC
AACAGTCAACACCGAAATTCAGGGCTCAACAAATGCTCCTCTCTTGTATT
TGCACATAAAGATGACATAAGGGTACAAACTAGAAACAGTTTTGTTTAAC
AAATAAACTGCTCAAAAATCTTCACAGCTTTTCCATGACCGTGTGCGTAC
AGAAAGCAAGAAGCAGGGCGTGTTGAATGGACGTGCCCAGCCGGTTGGAT
ACTCTCAAGACTCGACAAGTTATTGCAATGAGGCAAAACTGAACTTCCAT
AGAACGTGGGCCATTGAAATGGAAGCCCCAATTGTCGATTAACGCTTAAC
CCATTGGAAGCTCTTTCTCGCTTTTGCCTTCCCTGGTTTTTTCCTTTCAA
CCACACGTGAATCTCTCGTCAAGAACCCAGCGGATCTGAGTGCAGGACGT
AGATCTGGTTCCCAATTTTGCAATGCCCTGCTGATCCCTAGCCTAACAGC
TCCAACTTGACCTGAAACGCCACCCCCTTTGACAGTACAATCGACATCCC
AAAGGCCCAAGGTCTTTGTCTCAGAGAAAGGTCGAAGAAGTGCAGCACGA
TGATCAAGCATTGGGAAATAGACGTCAAATTCTTTATCATTAACATGAAT
TTTCCATCACCAGGTT
back to top