CX296476

Overview
NameCX296476
Unique NameCX296476
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13619 contig Ccv1_Contig13619:394..1097. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296476 vs. ExPASy Swiss-Prot
Match: CPRF2_PETCR (Light-inducible protein CPRF2 OS=Petroselinum crispum GN=CPRF2 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.061e-33
Identity = 91/220 (41.36%), Postives = 122/220 (55.45%), Query Frame = 3
Query:   27 VKTKLDLACAAVAL-RTAPVKPEDKSSLIENQTQAAKPSELGSQAMATVNVSTAHDALGTHPKADFRPLGSADLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL-DSVDDKRARRMLXXXXXXXXXXXXKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLA-RSDVPGVGM 677
            +K++LDLACAAVAL R + +KP+D ++L++N +QA+  S+L SQ        + HD      K       +  L                                       D  D KR RRML            KQAH+ ELETQ  QLR E+SSLLK LTD++Q+Y+++AV+NR+LKADIET+RAKVKMAEETVKRVTGLNP+  +  S++  +GM
Sbjct:   85 LKSRLDLACAAVALTRASSLKPQDSAALLDNGSQASNTSQLVSQVPPK---GSGHDLSKEEDKEALAATATPLLPALQKKSAIQVKSTTSGSSRDHSDDDDELEGETETTRNGDPSDAKRVRRMLSNRESARRSRRRKQAHMTELETQVSQLRVENSSLLKRLTDISQRYNDAAVDNRVLKADIETMRAKVKMAEETVKRVTGLNPMFQSMSSEISTIGM 301          
BLAST of CX296476 vs. ExPASy Swiss-Prot
Match: OP2_MAIZE (Regulatory protein opaque-2 OS=Zea mays GN=O2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 38/64 (59.38%), Postives = 53/64 (82.81%), Query Frame = 3
Query:  432 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 623
            K AHL ELE Q  QL+AE+S LL+ +  +NQKY+++ V+NR+L+AD+ETLRAKVKM E+++KRV
Sbjct:  246 KAAHLKELEDQVAQLKAENSCLLRRIAALNQKYNDANVDNRVLRADMETLRAKVKMGEDSLKRV 309          
The following BLAST results are available for this feature:
BLAST of CX296476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CPRF2_PETCR6.061e-3341.36Light-inducible protein CPRF2 OS=Petroselinum cris... [more]
OP2_MAIZE9.722e-1559.38Regulatory protein opaque-2 OS=Zea mays GN=O2 PE=1... [more]
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Properties
Property NameValue
Genbank descriptionC05141E09SK FerrChloL1 Citrus clementina cDNA clone C05141E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296476 ID=CX296476; Name=CX296476; organism=Citrus clementina; type=EST; length=704bp
AGGCCTCGTGCCGAATTCGGCACGAGGTAAAAACCAAACTCGATCTAGCG
TGCGCTGCTGTTGCTCTCAGGACAGCGCCTGTGAAGCCAGAAGATAAATC
TTCTTTAATTGAGAATCAAACGCAGGCGGCCAAGCCTTCTGAGTTGGGAT
CCCAAGCTATGGCTACCGTCAATGTAAGCACTGCTCATGATGCGCTAGGA
ACACACCCTAAGGCTGATTTCAGACCACTTGGCTCAGCTGACTTACCAGC
TGTCCAGGCAAGACCAGCAGCGCAAGTCAGGCAATCAACGAGTGGGTCAT
CGCGAGAAGATTCAGACGATGATGAGCTTGAAGGAGATACAGAAACCATA
GAGGGTTTGGACTCGGTGGATGATAAACGTGCAAGAAGGATGCTGTCAAA
TCGAGAGTCAGCAAGACGCTCTAGGAGAAGAAAACAAGCACATCTGAATG
AATTAGAAACACAGGCTGGTCAATTACGAGCTGAACATTCTTCGTTACTA
AAAGGTCTGACCGACGTGAACCAGAAATATGATGAATCTGCTGTCAATAA
CAGAATATTGAAAGCTGATATTGAGACATTAAGAGCAAAGGTAAAAATGG
CTGAAGAAACAGTTAAGCGAGTGACTGGGTTGAATCCCCTGCTTTTAGCC
AGATCCGATGTGCCAGGTGTTGGCATGCCATTAGTCAACGTCCCACTCGA
TGCG
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