CX296484

Overview
NameCX296484
Unique NameCX296484
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length577
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU2_SOYBN (Elongation factor Tu, chloroplastic OS=Glycine max GN=TUFB1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.249e-22
Identity = 51/59 (86.44%), Postives = 56/59 (94.92%), Query Frame = -1
Query:  401 RVSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 577
            +V+ IM DKD ESKMVMPGDRVK+VVELI+PVACEQGMRF+IREGGKTVGAGVIQSIIE
Sbjct:  421 KVTEIMNDKDEESKMVMPGDRVKLVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 479          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU1_SOYBN (Elongation factor Tu, chloroplastic OS=Glycine max GN=TUFA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.543e-22
Identity = 51/59 (86.44%), Postives = 56/59 (94.92%), Query Frame = -1
Query:  401 RVSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 577
            +V+SIM DKD ES MV+PGDRVKMVVELI+PVACEQGMRF+IREGGKTVGAGVIQSIIE
Sbjct:  421 KVTSIMNDKDEESTMVLPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 479          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_TOBAC (Elongation factor Tu, chloroplastic OS=Nicotiana tabacum GN=TUFA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.593e-21
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = -1
Query:  401 RVSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 577
            +V+SI TDK  ESKMVMPGDRV +VVELIMPVACEQGMRF+IREGGKTVGAGVIQ IIE
Sbjct:  420 KVTSITTDKGEESKMVMPGDRVNLVVELIMPVACEQGMRFAIREGGKTVGAGVIQKIIE 478          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTUA_NICSY (Elongation factor TuA, chloroplastic OS=Nicotiana sylvestris GN=TUFA PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 3.593e-21
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = -1
Query:  401 RVSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 577
            +V+SI TDK  ESKMVMPGDRV +VVELIMPVACEQGMRF+IREGGKTVGAGVIQ IIE
Sbjct:  420 KVTSITTDKGEESKMVMPGDRVNLVVELIMPVACEQGMRFAIREGGKTVGAGVIQKIIE 478          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTUB_NICSY (Elongation factor TuB, chloroplastic OS=Nicotiana sylvestris GN=TUFB PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.004e-21
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = -1
Query:  401 RVSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 577
            +V+ IM+DK  ESKMVMPGDRV MVVELIMPVACEQGMRF+IREGGKTVGAGVIQ I+E
Sbjct:  427 KVTVIMSDKGEESKMVMPGDRVNMVVELIMPVACEQGMRFAIREGGKTVGAGVIQKILE 485          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_ARATH (Elongation factor Tu, chloroplastic OS=Arabidopsis thaliana GN=TUFA PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.045e-20
Identity = 48/59 (81.36%), Postives = 55/59 (93.22%), Query Frame = -1
Query:  401 RVSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 577
            +V+ IM DKD ESKMVMPGDRVK+VVELI+PVACEQGMRF+IREGGKTVGAGVI +I+E
Sbjct:  418 KVTKIMNDKDEESKMVMPGDRVKIVVELIVPVACEQGMRFAIREGGKTVGAGVIGTILE 476          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_PEA (Elongation factor Tu, chloroplastic OS=Pisum sativum GN=tufA PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.041e-20
Identity = 49/59 (83.05%), Postives = 55/59 (93.22%), Query Frame = -1
Query:  401 RVSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 577
            +V+SIM DKD ESKMVMPGDRVK+VVELI+PVA EQGMRF+IREGGKTVGAGVI +IIE
Sbjct:  430 KVTSIMNDKDEESKMVMPGDRVKIVVELIVPVAIEQGMRFAIREGGKTVGAGVIGAIIE 488          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_OSTTA (Elongation factor Tu, chloroplastic OS=Ostreococcus tauri GN=tufA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.752e-16
Identity = 38/59 (64.41%), Postives = 50/59 (84.75%), Query Frame = -1
Query:  401 RVSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 577
            ++ S ++D+  E+ MVMPGDRVKMVVELI P+A E GMRF+IREGG+TVGAGV+ SI++
Sbjct:  351 KIESFISDEGDEATMVMPGDRVKMVVELIQPIAIENGMRFAIREGGRTVGAGVVSSILK 409          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_NEPOL (Elongation factor Tu, chloroplastic OS=Nephroselmis olivacea GN=tufA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.256e-15
Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = -1
Query:  404 RVSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSII 577
            ++ S   D   E+ MVMPGDRVKMVVELI P+A E+GMRF+IREGG+TVGAGV+ +II
Sbjct:  352 KIDSFRADDGGEATMVMPGDRVKMVVELIQPIAIEKGMRFAIREGGRTVGAGVVSNII 409          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_CHLAT (Elongation factor Tu, chloroplastic OS=Chlorokybus atmophyticus GN=tufA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.256e-15
Identity = 36/59 (61.02%), Postives = 50/59 (84.75%), Query Frame = -1
Query:  401 RVSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 577
            ++ S   D  +E++MVMPGDR+KMVV+LI P+A E+GMRF+IREGG+TVGAGV+ +I+E
Sbjct:  352 KIESFQADDGSETQMVMPGDRIKMVVQLIQPIAIEKGMRFAIREGGRTVGAGVVFNILE 410          
The following BLAST results are available for this feature:
BLAST of CX296484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
EFTU2_SOYBN3.249e-2286.44Elongation factor Tu, chloroplastic OS=Glycine max... [more]
EFTU1_SOYBN5.543e-2286.44Elongation factor Tu, chloroplastic OS=Glycine max... [more]
EFTU_TOBAC3.593e-2184.75Elongation factor Tu, chloroplastic OS=Nicotiana t... [more]
EFTUA_NICSY3.593e-2184.75Elongation factor TuA, chloroplastic OS=Nicotiana ... [more]
EFTUB_NICSY8.004e-2183.05Elongation factor TuB, chloroplastic OS=Nicotiana ... [more]
EFTU_ARATH1.045e-2081.36Elongation factor Tu, chloroplastic OS=Arabidopsis... [more]
EFTU_PEA3.041e-2083.05Elongation factor Tu, chloroplastic OS=Pisum sativ... [more]
EFTU_OSTTA7.752e-1664.41Elongation factor Tu, chloroplastic OS=Ostreococcu... [more]
EFTU_NEPOL2.256e-1565.52Elongation factor Tu, chloroplastic OS=Nephroselmi... [more]
EFTU_CHLAT2.256e-1561.02Elongation factor Tu, chloroplastic OS=Chlorokybus... [more]

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Properties
Property NameValue
Genbank descriptionC05141F09SK FerrChloL1 Citrus clementina cDNA clone C05141F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296484 ID=CX296484; Name=CX296484; organism=Citrus clementina; type=EST; length=577bp
GCCGGCTCGCAAGACGAGTTCCCGACCCGGCTTATCAGCGCCTCCGAGGG
TATATACCCATCGCCCTCCCGATCCACCTCGCTCAGAATCGACGAGACCT
CCTCTTGGGCCGGGGGGGCCGCTCCGAGCCGGATCAAGAGCGCCTCCAGA
TCGCTTCTCAACACCACCCCGTCGTTGGCACTGTCGAGCAACTTACAAGC
CTGGACGAGGTCGTAATTCAAATCTAGCGAGATATCGGCCGACATGTCGG
ACCAGTCACCCGATATCTCGTGTAAGACACTAGTCCTCGTGCCGAATTCG
GCACGAGGTAATTCCGATAAAAACTTAAGAATATGAAGTATAACACCGCT
CAAAAAAGTAAACGATAATCCACTGCCCATGAGAGTTCCTAGTACTATCA
TTCAATGATGGACTGAATAACACCAGCTCCGACAGTCTTTCCTCCTTCTC
TGATGGAAAATCTCATCCCTTGCTCACAAGCCACTGGCATAATAAGCTCC
ACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGACTCCGCGTC
CTTGTCGGTCATAATAGAAGACACCCT
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