CX296489

Overview
NameCX296489
Unique NameCX296489
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig691 contig Ccv1_Contig691:1..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX296489 vs. ExPASy Swiss-Prot
Match: TMP14_ARATH (Thylakoid membrane phosphoprotein 14 kDa, chloroplastic OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.164e-39
Identity = 89/164 (54.27%), Postives = 104/164 (63.41%), Query Frame = 2 
Query:   44 TLVDAKAP-RQSAPASTQCXXXXXXXXXXXXXXXXXWKATTYCRKMARNVMAMAT---GEAPA---EVAATELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRXXXXXXXXXXXXIGYTGWFAYKNLVFKPDREALIQKIKDTYKDIIGSS 514
            T++D++AP  + A AS                     KAT YCRK+ RNV+  AT   GEAPA   E   TELPEIVKT QEAW+KV+DKYA+ SLA    +A+WGS GMISAIDR            IGYTGWF YKNLVFKPDREAL +K+K TYKDI+GSS
Sbjct:   11 TIIDSRAPPSRLASASASSPSCISLPTLPIQSHTRAAKATAYCRKIVRNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGSS 174
The following BLAST results are available for this feature:
BLAST of CX296489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TMP14_ARATH1.164e-3954.27Thylakoid membrane phosphoprotein 14 kDa, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionC05141G05SK FerrChloL1 Citrus clementina cDNA clone C05141G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296489 ID=CX296489; Name=CX296489; organism=Citrus clementina; type=EST; length=715bp
GAGGGCCATGGCCTCCAGCGCACTCTCAATCTCTTCCTCCTCAACTCTTG
TTGATGCCAAGGCTCCTCGCCAGTCCGCTCCTGCCTCAACACAATGTGTG
TCTCTTCCTACACTCCCACCACCGCCGGTTCCCTCTCAAACCCGCCCTTG
GAAGGCAACTACATATTGTCGAAAGATGGCCCGCAATGTCATGGCTATGG
CAACAGGGGAGGCTCCAGCTGAAGTTGCTGCAACTGAGCTTCCAGAGATT
GTCAAGACCGTGCAAGAAGCTTGGGACAAAGTTGAAGATAAGTATGCAGT
GACTTCACTTGCTGTAACTGTTGCTATTGCCGTATGGGGCTCTACGGGAA
TGATTTCGGCAATTGATAGGCTTCCTTTAGTTCCTGGAGTTCTCGAGCTT
GTCGGCATTGGCTACACCGGGTGGTTTGCATACAAGAACCTGGTTTTCAA
ACCAGACAGGGAAGCATTAATACAGAAAATAAAAGACACATACAAGGATA
TAATAGGGAGCAGCTGAAGGAAACCAAAGGAATAGTACGGCTGCTGAGAT
GATGAGGTAAAAGTTTCACTTTTTGAAGCGAATATCTTGCAGCATTAATT
GAGTATAAGAATGTAAACAACAATGCTTCTTCTGTTGGCATTAGTTCCTA
ACCAGAGTAATTAAACTCATGTGATGTCCTCGTGCCGAATTCGGCCCGAG
GGGGGGCCCGGTACC
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