CX296491

Overview
NameCX296491
Unique NameCX296491
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length207
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296491 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.395e-17
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:   85 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV 207
            MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV
Sbjct:    1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV 41
[Close]
BLAST of CX296491 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.395e-17
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:   85 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV 207
            MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV
Sbjct:    1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV 41
[Close]
BLAST of CX296491 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.395e-17
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:   85 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV 207
            MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV
Sbjct:    1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV 41
[Close]
BLAST of CX296491 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.395e-17
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:   85 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV 207
            MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV
Sbjct:    1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV 41
[Close]
BLAST of CX296491 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.395e-17
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:   85 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV 207
            MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV
Sbjct:    1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV 41
[Close]
BLAST of CX296491 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.335e-17
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:   85 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV 207
            M+YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV
Sbjct:    1 MTYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV 41
[Close]
BLAST of CX296491 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.335e-17
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:   85 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV 207
            M+YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV
Sbjct:    1 MTYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV 41
[Close]
BLAST of CX296491 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.335e-17
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:   85 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV 207
            M+YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV
Sbjct:    1 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV 41
[Close]
BLAST of CX296491 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.335e-17
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:   85 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV 207
            M+YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV
Sbjct:    1 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV 41
[Close]
BLAST of CX296491 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.335e-17
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:   85 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV 207
            M+YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV
Sbjct:    1 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV 41
The following BLAST results are available for this feature:
BLAST of CX296491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
YPTV4_VOLCA2.395e-17100.00GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTC4_CHLRE2.395e-17100.00GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
RAB2_LYMST2.395e-17100.00Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB2B_MAIZE2.395e-17100.00Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]
RAB2A_MAIZE2.395e-17100.00Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
RAB2B_MOUSE5.335e-1797.56Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB2B_HUMAN5.335e-1797.56Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RAB2A_RABIT5.335e-1797.56Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_PONAB5.335e-1797.56Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MOUSE5.335e-1797.56Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]

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Properties
Property NameValue
Genbank descriptionC05141G08SK FerrChloL1 Citrus clementina cDNA clone C05141G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296491 ID=CX296491; Name=CX296491; organism=Citrus clementina; type=EST; length=207bp
GAGGGTTTCCTCCTGTTCTAATCAAAAGTGAAATCCATAAATAAATTGAC
TCCTGATTGATCGGTCCTCATCAATCAAACAAACATGTCGTACGCTTACC
TCTTCAAGTACATCATCATCGGCGATACCGGAGTTGGTAAATCATGTCTT
CTTCTCCAATTCACGGATAAGCGGTTTCAGCCGGTTCACGACCTAACTAT
AGGAGTT
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