CX296495

Overview
NameCX296495
Unique NameCX296495
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296495_ssr306 microsatellite CX296495_ssr306:306..317. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig158 contig Ccv1_Contig158:251..924. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296495 vs. ExPASy Swiss-Prot
Match: NACA2_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.236e-40
Identity = 90/139 (64.75%), Postives = 99/139 (71.22%), Query Frame = 2
Query:   65 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 481
            AMLKLGMKPVTGVSRVTIKRTKN+LFFISKPDVFKSP+SETYVIFGEAKIED            FRMP++G+   + +                        RDIDLVMTQAGVSRSKAVKALK+H+GDIVSAIMELTT
Sbjct:   79 AMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFGEAKIEDLSSQLQTQAAQQFRMPEIGATSQRAEASTATVEAQVEEDEEEIDETGVEARDIDLVMTQAGVSRSKAVKALKSHDGDIVSAIMELTT 217          
BLAST of CX296495 vs. ExPASy Swiss-Prot
Match: NACA4_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 4 OS=Arabidopsis thaliana GN=At4g10480 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.670e-37
Identity = 86/139 (61.87%), Postives = 94/139 (67.63%), Query Frame = 2
Query:   65 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 481
            AMLKLGMKPVT VSRVTIKR+KN+LF ISKPDVFKSPNSETYVIFGEAKI+D            F+MPD+ S++   D                        +DIDLVMTQAGVSR KAVKALK  NGDIVSAIMELTT
Sbjct:   74 AMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGEAKIDDMSSQLQAQAAQRFKMPDVASMIPNTDGSEAATVAQEEEDDEDVDETGVEAKDIDLVMTQAGVSRPKAVKALKESNGDIVSAIMELTT 212          
BLAST of CX296495 vs. ExPASy Swiss-Prot
Match: NACA1_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Arabidopsis thaliana GN=At3g12390 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.323e-34
Identity = 81/139 (58.27%), Postives = 95/139 (68.35%), Query Frame = 2
Query:   65 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 481
            AMLKLGMKP+TGVSRVT+K++KNILF ISKPDVFKSP S+TYVIFGEAKIED            F+ PD+ +V++K +                       P+DI+LVMTQAGVSR  AVKALK  +GDIVSAIMELTT
Sbjct:   69 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQIQSQAAEQFKAPDLSNVISKGE----SSSAAVVQDDEEVDEEGVEPKDIELVMTQAGVSRPNAVKALKAADGDIVSAIMELTT 203          
BLAST of CX296495 vs. ExPASy Swiss-Prot
Match: NACA5_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 5 OS=Arabidopsis thaliana GN=At1g33040 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 3.851e-34
Identity = 78/139 (56.12%), Postives = 93/139 (66.91%), Query Frame = 2
Query:   65 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 481
            A+LKLGMKPV+ VSRVTIKR KN+LF ISKPDV+KSPN+ETYVIFGEAK++D            F+MPD+ S++                            RDIDLVMTQAGVS++KAV ALK ++GDIVSAIMELTT
Sbjct:   71 AVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAETYVIFGEAKVDDLSSQLQTQAAQRFKMPDVTSMLPNAGSEATMAPLAEEEDEDDVDDTGVEARDIDLVMTQAGVSKAKAVSALKANDGDIVSAIMELTT 209          
BLAST of CX296495 vs. ExPASy Swiss-Prot
Match: NACA3_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 3 OS=Arabidopsis thaliana GN=At5g13850 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.578e-34
Identity = 79/140 (56.43%), Postives = 96/140 (68.57%), Query Frame = 2
Query:   65 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPD-XXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 481
            AMLKLGMKP+TGVSRVT+K++KNILF ISKPDVFKSP S+TYVIFGEAKIED            F+ P++ +V+++ +                        P+DI+LVMTQAGVS+ +AVKALK  NGDIVSAIMELTT
Sbjct:   65 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQLQSQAAEQFKAPNLSNVISQGETSSAATAAAVQDDDDEEVDEEGVEPKDIELVMTQAGVSKPRAVKALKLANGDIVSAIMELTT 204          
BLAST of CX296495 vs. ExPASy Swiss-Prot
Match: NACA_PINTA (Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.463e-33
Identity = 79/139 (56.83%), Postives = 93/139 (66.91%), Query Frame = 2
Query:   65 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 481
            AMLKLGMKPV+GVSRVTIK++KNILF IS PDVFKSP S+TY+ FGEAKIED            F+ P++  V  KP+                       P+DI+LVMTQAGVSR+KAVKALK  +GDIVSAIM+LTT
Sbjct:   72 AMLKLGMKPVSGVSRVTIKKSKNILFVISNPDVFKSPTSDTYIAFGEAKIEDLSSQLQTQAAEQFKAPNLSHVTMKPE-----SSTAAQEDEDEVDDTGVEPKDIELVMTQAGVSRTKAVKALKAADGDIVSAIMDLTT 205          
BLAST of CX296495 vs. ExPASy Swiss-Prot
Match: NACA_ORENI (Nascent polypeptide-associated complex subunit alpha OS=Oreochromis niloticus GN=naca PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.777e-27
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = 2
Query:   65 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 478
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED            F++P  G  ++                           +DI+LVM+QA VSR+KAV+ALK +N DIV+AIMELT
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVP--GETVSNVQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNNNDIVNAIMELT 214          
BLAST of CX296495 vs. ExPASy Swiss-Prot
Match: NACAD_MOUSE (NAC-alpha domain-containing protein 1 OS=Mus musculus GN=Nacad PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.327e-26
Identity = 66/141 (46.81%), Postives = 87/141 (61.70%), Query Frame = 2
Query:   65 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMA---KPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 478
            AM KLG++ + GV+R+TI+++KNILF I+KPDVFKSP S+TYV+FGEAKIED            F++P   S +     P                        PRDI+LVM QA V+R+KAV+ALK ++ DIV+AIMELT
Sbjct: 1363 AMSKLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDLSQQVHKAAAEKFKVPSEPSALVPELSPGPRVRPECEEQEEEDEEVEEAGLEPRDIELVMAQANVTRAKAVRALKDNHSDIVNAIMELT 1503          
BLAST of CX296495 vs. ExPASy Swiss-Prot
Match: NACA_XENTR (Nascent polypeptide-associated complex subunit alpha OS=Xenopus tropicalis GN=naca PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.502e-25
Identity = 64/138 (46.38%), Postives = 87/138 (63.04%), Query Frame = 2
Query:   65 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 478
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED            F++   G  ++                           +DI+LVM+QA VSR+KAV+ALK ++ DIV+AIMELT
Sbjct:   78 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 213          
BLAST of CX296495 vs. ExPASy Swiss-Prot
Match: NACA_XENLA (Nascent polypeptide-associated complex subunit alpha OS=Xenopus laevis GN=naca PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.502e-25
Identity = 64/138 (46.38%), Postives = 87/138 (63.04%), Query Frame = 2
Query:   65 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 478
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED            F++   G  ++                           +DI+LVM+QA VSR+KAV+ALK ++ DIV+AIMELT
Sbjct:   77 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGETVSNIQENTQTPTVQEESEEEEVDEAGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 212          
The following BLAST results are available for this feature:
BLAST of CX296495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
NACA2_ARATH1.236e-4064.75Nascent polypeptide-associated complex subunit alp... [more]
NACA4_ARATH1.670e-3761.87Nascent polypeptide-associated complex subunit alp... [more]
NACA1_ARATH1.323e-3458.27Nascent polypeptide-associated complex subunit alp... [more]
NACA5_ARATH3.851e-3456.12Nascent polypeptide-associated complex subunit alp... [more]
NACA3_ARATH8.578e-3456.43Nascent polypeptide-associated complex subunit alp... [more]
NACA_PINTA1.463e-3356.83Nascent polypeptide-associated complex subunit alp... [more]
NACA_ORENI7.777e-2747.83Nascent polypeptide-associated complex subunit alp... [more]
NACAD_MOUSE1.327e-2646.81NAC-alpha domain-containing protein 1 OS=Mus muscu... [more]
NACA_XENTR2.502e-2546.38Nascent polypeptide-associated complex subunit alp... [more]
NACA_XENLA2.502e-2546.38Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionC05141H03SK FerrChloL1 Citrus clementina cDNA clone C05141H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296495 ID=CX296495; Name=CX296495; organism=Citrus clementina; type=EST; length=674bp
GAGGCCTCGTGCCGAATTCGGCACGAGGTCAAAGCAGAGCAGAAGTGAGA
AAAAGAGCCGCAAGGCAATGCTGAAGTTGGGCATGAAACCTGTAACAGGA
GTTAGCAGGGTAACCATCAAGAGAACCAAAAATATACTATTTTTCATCTC
AAAGCCTGATGTTTTCAAGAGCCCAAATTCTGAAACATACGTCATATTTG
GGGAAGCCAAAATAGAGGATTTGAGCACCCAGCTGCAGACACAGGCTGCC
CAGCAGTTCAGGATGCCTGACATGGGATCGGTGATGGCGAAACCAGATGC
CTCTTCTGCTGCTGCTGGTGCACAACAAGATGAGGAAGAGGAGGAAGTTG
ATGAGACGGGAGTTGAGCCTCGGGACATTGATTTGGTCATGACACAGGCT
GGTGTCTCAAGAAGCAAGGCTGTCAAAGCTCTGAAGACACATAATGGAGA
CATTGTTAGTGCTATCATGGAGCTTACTACTTGAGTAGATTTGCTTCCAT
GCAGTATTTTTCTGTCGATGAATTTAGTTATTGTAGTCGGTGAGATGACT
GAATTACTACTCTATTTTTGTGCACTTAATACAATTTCTGTTGCAGATAC
AATTTCTTTTGCAGTGAGGATGAGAATCCTCCTCGCTAGTTGTTTTAATG
GTTAGTAGTTGGGGGGGGCCCGGT
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