CX296498

Overview
NameCX296498
Unique NameCX296498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6884 contig Ccv1_Contig6884:73..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX296498 vs. ExPASy Swiss-Prot
Match: BH147_ARATH (Transcription factor bHLH147 OS=Arabidopsis thaliana GN=BHLH147 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.252e-30
Identity = 76/147 (51.70%), Postives = 90/147 (61.22%), Query Frame = 1 
Query:  241 QWKSETQQQIYSSKLIQALNHV-------NGASPSAPRRGRAVREAADRVLAVAAKGRTRWSRAILTXXXXXXXXXXXXVNRVXXXXXXXXXXXXXXXXXXXFSVLRLKAKSLPAVQRKVRVLGRLVPGCRKQPFPVILEEATDYIA 660
            +W+SE QQQIYS+KL+ AL  +       + +S S PR GRAVRE ADR LAVAA+G+T WSRAIL+              R+                    +VLRLKAK LPAVQRKV+VL RLVPGCRKQ  PV+LEE TDYIA
Sbjct:   49 KWRSEKQQQIYSTKLVHALRELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTLWSRAILSKAVKLKFRKHKR-QRISNPTTTTLTTGSIRSKKQRATVLRLKAKGLPAVQRKVKVLSRLVPGCRKQSLPVVLEETTDYIA 194
[Close]
BLAST of CX296498 vs. ExPASy Swiss-Prot
Match: BH148_ARATH (Transcription factor bHLH148 OS=Arabidopsis thaliana GN=BHLH148 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.044e-28
Identity = 75/148 (50.68%), Postives = 86/148 (58.11%), Query Frame = 1 
Query:  241 QWKSETQQQIYSSKLIQALNHVN-------GASPSAPRRGRAVREAADRVLAVAAKGRTRWSRAILT--XXXXXXXXXXXXVNRVXXXXXXXXXXXXXXXXXXXFSVLRLKAKSLPAVQRKVRVLGRLVPGCRKQPFPVILEEATDYI 657
            +W+SE QQ+IYS+KL QAL  V         +SP+A +RG+AVREAADR LAV+A+GRT WSRAIL                                       SVLRL  KS+P V RKVRVLGRLVPGC KQ  PVILEEATDYI
Sbjct:   47 RWRSEKQQRIYSAKLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAILANRIKLKFRKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKVRVLGRLVPGCGKQSVPVILEEATDYI 194
The following BLAST results are available for this feature:
BLAST of CX296498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BH147_ARATH3.252e-3051.70Transcription factor bHLH147 OS=Arabidopsis thalia... [more]
BH148_ARATH3.044e-2850.68Transcription factor bHLH148 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC05141H06SK FerrChloL1 Citrus clementina cDNA clone C05141H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296498 ID=CX296498; Name=CX296498; organism=Citrus clementina; type=EST; length=662bp
AGGCCTCGTGCCGAATTCGGCACGAGGCGACGTCATTTCACCCACCCCGT
TCCGTTTTCGTTCCTGATCTCCTTTTTTATTTCTCTCAAAGCAGGTCTGC
ACTTGGAATATTTCCGAATATTATCCACCAAAACGATGTCGTCAACTCTG
ATATCGAATCCGGTAACGAACTCTGATCGCTCTAAAAGGAAAAAGAAAAA
GAAGGCCTCACAATCAAAAGAGTCCAAGCAAAACCAAACCCAATGGAAAT
CAGAAACTCAGCAACAAATCTACTCCTCAAAACTCATCCAAGCTTTAAAC
CACGTCAACGGCGCGTCTCCTTCGGCTCCGCGCCGAGGGCGAGCCGTCCG
GGAGGCGGCTGACCGCGTGCTAGCCGTGGCGGCCAAAGGGAGGACCCGGT
GGAGCCGAGCCATTTTGACTCACAGACTCAAGCTCAAGTTTAGAAAACAT
AAGAAGGTGAATAGAGTATCGGCTCCTTCGGCAGCAGCTGCGGCCACCGG
GAGTGGCCGGTCAAAGAAGGCGGGATTTAGCGTTTTGAGGCTGAAAGCCA
AGAGTTTGCCGGCTGTTCAACGGAAAGTTCGCGTCCTTGGACGGTTGGTT
CCCGGTTGCCGTAAGCAGCCGTTTCCGGTTATCCTCGAAGAAGCAACTGA
TTATATAGCTGC
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