CX296504

Overview
NameCX296504
Unique NameCX296504
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length288
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig376 contig Ccv1_Contig376:288..575. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.748e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 2
Query:    5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 187
            LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF
Sbjct:   73 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 133          
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.748e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 2
Query:    5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 187
            LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF
Sbjct:   73 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 133          
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.748e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 2
Query:    5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 187
            LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF
Sbjct:   73 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 133          
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.748e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 2
Query:    5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 187
            LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF
Sbjct:   73 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 133          
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS23_RAT (40S ribosomal protein S23 OS=Rattus norvegicus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 4.760e-26
Identity = 55/61 (90.16%), Postives = 59/61 (96.72%), Query Frame = 2
Query:    5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 187
            LIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+
Sbjct:   74 LIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALY 134          
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS23_PIG (40S ribosomal protein S23 OS=Sus scrofa GN=RPS23 PE=2 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 4.760e-26
Identity = 55/61 (90.16%), Postives = 59/61 (96.72%), Query Frame = 2
Query:    5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 187
            LIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+
Sbjct:   74 LIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALY 134          
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS23_MOUSE (40S ribosomal protein S23 OS=Mus musculus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 4.760e-26
Identity = 55/61 (90.16%), Postives = 59/61 (96.72%), Query Frame = 2
Query:    5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 187
            LIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+
Sbjct:   74 LIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALY 134          
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS23_ICTPU (40S ribosomal protein S23 OS=Ictalurus punctatus GN=rps23 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.760e-26
Identity = 55/61 (90.16%), Postives = 59/61 (96.72%), Query Frame = 2
Query:    5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 187
            LIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+
Sbjct:   74 LIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALY 134          
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS23_HUMAN (40S ribosomal protein S23 OS=Homo sapiens GN=RPS23 PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 4.760e-26
Identity = 55/61 (90.16%), Postives = 59/61 (96.72%), Query Frame = 2
Query:    5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 187
            LIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+
Sbjct:   74 LIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALY 134          
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS23_CHILA (40S ribosomal protein S23 OS=Chinchilla lanigera GN=RPS23 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.760e-26
Identity = 55/61 (90.16%), Postives = 59/61 (96.72%), Query Frame = 2
Query:    5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 187
            LIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+
Sbjct:   74 LIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALY 134          
The following BLAST results are available for this feature:
BLAST of CX296504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RS23_FRAAN1.748e-28100.0040S ribosomal protein S23 OS=Fragaria ananassa GN=... [more]
RS23_EUPES1.748e-28100.0040S ribosomal protein S23 OS=Euphorbia esula GN=RP... [more]
RS232_ARATH1.748e-28100.0040S ribosomal protein S23-2 OS=Arabidopsis thalian... [more]
RS231_ARATH1.748e-28100.0040S ribosomal protein S23-1 OS=Arabidopsis thalian... [more]
RS23_RAT4.760e-2690.1640S ribosomal protein S23 OS=Rattus norvegicus GN=... [more]
RS23_PIG4.760e-2690.1640S ribosomal protein S23 OS=Sus scrofa GN=RPS23 P... [more]
RS23_MOUSE4.760e-2690.1640S ribosomal protein S23 OS=Mus musculus GN=Rps23... [more]
RS23_ICTPU4.760e-2690.1640S ribosomal protein S23 OS=Ictalurus punctatus G... [more]
RS23_HUMAN4.760e-2690.1640S ribosomal protein S23 OS=Homo sapiens GN=RPS23... [more]
RS23_CHILA4.760e-2690.1640S ribosomal protein S23 OS=Chinchilla lanigera G... [more]

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Properties
Property NameValue
Genbank descriptionC05141H12SK FerrChloL1 Citrus clementina cDNA clone C05141H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296504 ID=CX296504; Name=CX296504; organism=Citrus clementina; type=EST; length=288bp
TTCACTTATCAAAAACGGAAAGAAGATTGCCGCTTTTGTTCCAAATGATG
GTTGCTTGAACTATATTGAAGAAAATGATGAGGTGTTGATTGCTGGATTT
GGACGTAAGGGACATGCGGTCGGTGATATTCCCGGTGTCAGGTTCAAGGT
TGTGAAGGTCTCTGGTGTCTCTCTCTTGGCTCTCTTCAAAGAGAAGAAGG
AGAAGCCCAGGTCTTAAGAGAAGAGACCTGTCTTAACCTGCAAACTCTTT
GATAGTTCTTTTAAAGAATTCGGATTGTCACTTTTTGT
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