CX296510

Overview
NameCX296510
Unique NameCX296510
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig309 contig Ccv1_Contig309:81..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 4.779e-72
Identity = 135/152 (88.82%), Postives = 139/152 (91.45%), Query Frame = -3
Query:  206 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 661
            MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERL+KIRNHRGLRHYWGLRVRGQH            VSKKR
Sbjct:    1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.927e-58
Identity = 107/152 (70.39%), Postives = 128/152 (84.21%), Query Frame = -3
Query:  206 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 661
            MSLV  E FQHILRV+NTN+DG++KIMFALTSIKG+GRR +NIVCKKAD+D++KRAGELS  E++ L+ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N+LD KLR+DLERL+KIR HRGLRHYWGLRVRGQH            VSKK+
Sbjct:    1 MSLVIPEKFQHILRVMNTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELSDEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS18_AEQIR (40S ribosomal protein S18 OS=Aequipecten irradians GN=RPS18 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.342e-57
Identity = 101/135 (74.81%), Postives = 123/135 (91.11%), Query Frame = -3
Query:  257 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQH 661
            M+L+  E FQHILRV+NTN+DGK+KIMFA+T+IKG+GRR AN+VCKKADVD+ KRAGELS  E++ ++ +++NPRQ+KIP+WFLNRQKD KDGKYSQV+SNALD KLR+DLERL+KIR HRGLRHYWGLRVRGQH
Sbjct:    1 MALIIPEKFQHILRVMNTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELSEDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMSNALDNKLREDLERLKKIRAHRGLRHYWGLRVRGQH 135          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.544e-54
Identity = 100/152 (65.79%), Postives = 125/152 (82.24%), Query Frame = -3
Query:  206 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 661
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+NKRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERL+KIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS18_ICTPU (40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.869e-54
Identity = 99/152 (65.13%), Postives = 125/152 (82.24%), Query Frame = -3
Query:  206 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 661
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D++KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERL+KIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS18_RAT (40S ribosomal protein S18 OS=Rattus norvegicus GN=Rps18 PE=1 SV=3)

HSP 1 Score: 210.305 bits (534), Expect = 7.665e-54
Identity = 99/152 (65.13%), Postives = 124/152 (81.58%), Query Frame = -3
Query:  206 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 661
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERL+KIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS18_PIG (40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 PE=2 SV=3)

HSP 1 Score: 210.305 bits (534), Expect = 7.665e-54
Identity = 99/152 (65.13%), Postives = 124/152 (81.58%), Query Frame = -3
Query:  206 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 661
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERL+KIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS18_MOUSE (40S ribosomal protein S18 OS=Mus musculus GN=Rps18 PE=2 SV=3)

HSP 1 Score: 210.305 bits (534), Expect = 7.665e-54
Identity = 99/152 (65.13%), Postives = 124/152 (81.58%), Query Frame = -3
Query:  206 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 661
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERL+KIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS18_HUMAN (40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3)

HSP 1 Score: 210.305 bits (534), Expect = 7.665e-54
Identity = 99/152 (65.13%), Postives = 124/152 (81.58%), Query Frame = -3
Query:  206 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 661
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERL+KIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS18_CAPHI (40S ribosomal protein S18 OS=Capra hircus GN=RPS18 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 7.665e-54
Identity = 99/152 (65.13%), Postives = 124/152 (81.58%), Query Frame = -3
Query:  206 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 661
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERL+KIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
The following BLAST results are available for this feature:
BLAST of CX296510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS18_ARATH4.779e-7288.8240S ribosomal protein S18 OS=Arabidopsis thaliana ... [more]
RS18_BRABE3.927e-5870.3940S ribosomal protein S18 OS=Branchiostoma belcher... [more]
RS18_AEQIR4.342e-5774.8140S ribosomal protein S18 OS=Aequipecten irradians... [more]
RS18_DANRE1.544e-5465.7940S ribosomal protein S18 OS=Danio rerio GN=rps18 ... [more]
RS18_ICTPU5.869e-5465.1340S ribosomal protein S18 OS=Ictalurus punctatus G... [more]
RS18_RAT7.665e-5465.1340S ribosomal protein S18 OS=Rattus norvegicus GN=... [more]
RS18_PIG7.665e-5465.1340S ribosomal protein S18 OS=Sus scrofa GN=RPS18 P... [more]
RS18_MOUSE7.665e-5465.1340S ribosomal protein S18 OS=Mus musculus GN=Rps18... [more]
RS18_HUMAN7.665e-5465.1340S ribosomal protein S18 OS=Homo sapiens GN=RPS18... [more]
RS18_CAPHI7.665e-5465.1340S ribosomal protein S18 OS=Capra hircus GN=RPS18... [more]

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Properties
Property NameValue
Genbank descriptionC05142B04SK FerrChloL1 Citrus clementina cDNA clone C05142B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296510 ID=CX296510; Name=CX296510; organism=Citrus clementina; type=EST; length=684bp
AAATATATGTTGCAAAACATCTGAATAAAAATATTACCATAGAGAAAATA
ATAGATAAAAGACAGACAGTTCAAATGCTTAAAACCCATCCAAAGAAAAG
AAAATAAATCTAATATTGTCTGATGCAAATGTTCAGCAATAGCAAGTCCA
AACTCTTCCTGAACATGTGTATAGATTGTTCAAAACATTGATAAAGGACA
GCTCAACGCTTCTTGGAGACACCAACAGTCTTTCCACGACGGCCGGTGGT
CTTGGTGTGTTGTCCACGGACACGAAGACCCCAGTAGTGCCTGAGACCAC
GGTGGTTCCTGATCTTCCTCAGACGCTCCAAGTCATCTCTCAACTTCATG
TCCAGTGCATTGGATACAACCTGAGAATACTTTCCATCCTTGTAATCCTT
CTGTCTGTTCAAGAACCAATCAGGGATTTTAAACTGTCGGGGATTTGCAA
CAACGACCATGAGATTGTCAAGTTCAGCAGCAGATAGTTCACCGGCCCTC
TTGTTCATGTCAACATCAGCTTTCTTGCAAACGATGTTAGCCAGTCGCCT
TCCAATACCCTTAATTGAAGTAAGAGCAAACATAATCTTCTGCTTCCCGT
CGACGTTAGTGTTCAGCACACGCAAAATGTGCTGAAAATCTTCGTTCGCC
ACCAGAGACATTTTCGATTGTGAGGATTGATGAT
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