CX296520

Overview
NameCX296520
Unique NameCX296520
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length170
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296520 vs. ExPASy Swiss-Prot
Match: GCSP_PEA (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Pisum sativum GN=GDCSP PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.833e-18
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 3
Query:   30 RYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 170
            R+CDALISIR+EIA++E G AD+HNNVLKGAPHPPSLLM D WTKPY
Sbjct:  959 RFCDALISIRKEIAEVEKGNADVHNNVLKGAPHPPSLLMADAWTKPY 1005          
BLAST of CX296520 vs. ExPASy Swiss-Prot
Match: GCSP2_ARATH (Glycine dehydrogenase [decarboxylating] 2, mitochondrial OS=Arabidopsis thaliana GN=At4g33010 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.312e-18
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 3
Query:   30 RYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 170
            R+CDALISIREEIAQIE G AD+ NNVLKGAPHPPSLLM DTW KPY
Sbjct:  941 RFCDALISIREEIAQIEKGNADVQNNVLKGAPHPPSLLMADTWKKPY 987          
BLAST of CX296520 vs. ExPASy Swiss-Prot
Match: GCSP_SOLTU (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.406e-17
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 3
Query:   30 RYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 170
            R+CDALISIREEIAQIE G  DI+NNVLKGAPHPPS+LM D WTKPY
Sbjct:  938 RFCDALISIREEIAQIEKGNVDINNNVLKGAPHPPSMLMADAWTKPY 984          
BLAST of CX296520 vs. ExPASy Swiss-Prot
Match: GCSP1_ARATH (Glycine dehydrogenase [decarboxylating] 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSP PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.343e-17
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 3
Query:   30 RYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 170
            R+CDALISIREEI+QIE G AD +NNVLKGAPHPPSLLM DTW KPY
Sbjct:  947 RFCDALISIREEISQIEKGNADPNNNVLKGAPHPPSLLMADTWKKPY 993          
BLAST of CX296520 vs. ExPASy Swiss-Prot
Match: GCSPA_FLAPR (Glycine dehydrogenase [decarboxylating] A, mitochondrial OS=Flaveria pringlei GN=GDCSPA PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.524e-16
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 3
Query:   30 RYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 170
            R+CDALISIR+EIA+IE G  D++NNV+KGAPHPP LLM D WTKPY
Sbjct:  940 RFCDALISIRQEIAEIEKGNVDLNNNVIKGAPHPPQLLMADKWTKPY 986          
BLAST of CX296520 vs. ExPASy Swiss-Prot
Match: GCSP_FLAAN (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria anomala GN=GDCSP PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.716e-16
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 3
Query:   30 RYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 170
            R+CDALISIR+EIA+IE G  D +NNV+KGAPHPP LLM D WTKPY
Sbjct:  937 RFCDALISIRQEIAEIEKGNVDFNNNVIKGAPHPPQLLMADKWTKPY 983          
BLAST of CX296520 vs. ExPASy Swiss-Prot
Match: GCSPB_FLAPR (Glycine dehydrogenase [decarboxylating] B, mitochondrial OS=Flaveria pringlei GN=GDCSPB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.716e-16
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 3
Query:   30 RYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 170
            R+CDALISIR+EIA+IE G  D +NNV+KGAPHPP LLM D WTKPY
Sbjct:  937 RFCDALISIRQEIAEIEKGNVDFNNNVIKGAPHPPQLLMADKWTKPY 983          
BLAST of CX296520 vs. ExPASy Swiss-Prot
Match: GCSP_FLATR (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria trinervia GN=GDCSPA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.008e-15
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 3
Query:   30 RYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPY 170
            R+CDALISIR+EIA+IE G  D +NNV+KGAPHPP LLM D WTKPY
Sbjct:  937 RFCDALISIRQEIAEIEKGTVDFNNNVIKGAPHPPQLLMADKWTKPY 983          
The following BLAST results are available for this feature:
BLAST of CX296520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GCSP_PEA4.833e-1880.85Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP2_ARATH6.312e-1885.11Glycine dehydrogenase [decarboxylating] 2, mitocho... [more]
GCSP_SOLTU1.406e-1782.98Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP1_ARATH5.343e-1782.98Glycine dehydrogenase [decarboxylating] 1, mitocho... [more]
GCSPA_FLAPR4.524e-1674.47Glycine dehydrogenase [decarboxylating] A, mitocho... [more]
GCSP_FLAAN7.716e-1674.47Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSPB_FLAPR7.716e-1674.47Glycine dehydrogenase [decarboxylating] B, mitocho... [more]
GCSP_FLATR1.008e-1574.47Glycine dehydrogenase [decarboxylating], mitochond... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05142D03SK FerrChloL1 Citrus clementina cDNA clone C05142D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296520 ID=CX296520; Name=CX296520; organism=Citrus clementina; type=EST; length=170bp
GAGGCCTCTTGCCGAATTCGGCACGAGGCAGGTATTGTGATGCTCTCATC
TCCATCAGAGAAGAAATTGCACAGATTGAAAATGGGAAGGCAGATATCCA
CAACAATGTCCTGAAGGGGGCGCCTCATCCACCATCTTTGCTCATGGGAG
ATACATGGACTAAACCATAC
back to top