CX296521

Overview
NameCX296521
Unique NameCX296521
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig692 contig Ccv1_Contig692:1..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296521 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.825e-23
Identity = 73/179 (40.78%), Postives = 90/179 (50.28%), Query Frame = 1
Query:   73 EVFESLDPSMLSQLQGMSQKQSTPTQLQSPTGLQMRQNMNQLRASYPAANLSSSPVRKPXXXXXXXXXXXXXXXXXXXXXXFTKRSQSFIDRGAVTSRAGLSMVSNPPTMRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKD 609
            ++  S+DP+MLSQL  +S KQ+      S              A     ++ +SP+                         F KRSQSFIDRG   + A  S++S   T   S LSDW SPDGKLDWGVQGDEL+KL+KSASF FR  +     T       +   EPDVSWVNSLVKD
Sbjct:  423 DLLGSVDPAMLSQLHALSLKQAGDMPAYSSM------------ADTTQMHMPTSPMVGGANTAFGLDHSMAKAIMSSRASAFAKRSQSFIDRGG-RAPAARSLMSPATTGAPSILSDWGSPDGKLDWGVQGDELHKLRKSASFAFRGQSAMPVAT------HAAAAEPDVSWVNSLVKD 582          
BLAST of CX296521 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.478e-21
Identity = 72/194 (37.11%), Postives = 90/194 (46.39%), Query Frame = 1
Query:   43 RIGDVN-RNLDEVFESLDPSMLSQLQGMSQKQSTPTQLQSPTGLQMRQNMNQLRASYPAANLSSSPVRKPXXXXXXXXXXXXXXXXXXXXXXFTKRSQSFIDRGAVTSRAGLSMVSNPPTMRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPE 621
            R+GD+   NL+E F S D + + QLQ  S+                   MN     YP     SSPVR+P                      F KRS SF                  P   +SN+SDW SP+GKL+WG+Q DELNKL++SASFG   NN  + +     P+    DEPDVSWVNSLVK+  PE
Sbjct:  412 RLGDLKPSNLEETFGSYDSASVMQLQSPSR----------------HSQMNH----YP-----SSPVRQPPPHGFESSAAMAAAVMNARSSAFAKRSLSF-----------------KPAPVASNVSDWGSPNGKLEWGMQRDELNKLRRSASFGIHGNNNNSVS----RPARDYSDEPDVSWVNSLVKENAPE 559          
BLAST of CX296521 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.938e-18
Identity = 69/189 (36.51%), Postives = 90/189 (47.62%), Query Frame = 1
Query:  118 GMSQKQSTPTQLQSPT-GLQMRQNMNQLRASYPAANLSSSPVRKPXXXXXXXXXXXXXXXXXXXXXX-FTKRSQSFIDRGAVTSRAGLSMVSNPPTMRS--SNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQHTSMDGA 672
            G + +++  + + SP+   QM QNMNQ    YP     SSPVR+P                       F KRS SF                 P T  +  SNLSDW SP+GKL+WG++G+ELNK+++S SFG   NN           +    DEPDVSWVNSLVKD T   +  FG  ++   M  A
Sbjct:  411 GNNVEETFGSYVSSPSRNSQMGQNMNQ---HYP-----SSPVRQPPSQHGFESSAAAAVAVMKARSTAFAKRSLSF----------------KPATQAAPQSNLSDWGSPNGKLEWGMKGEELNKMRRSVSFGIHGNN-------NNNAARDYRDEPDVSWVNSLVKDSTVVSERSFGMNERVRIMSWA 568          
BLAST of CX296521 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 43/96 (44.79%), Postives = 58/96 (60.42%), Query Frame = 1
Query:  322 KRSQSFIDRGAVTSRAGLSMVSNPPTMRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKD 609
            +RSQSFI+R       GL+      +M ++ L+DW S DGKLDW VQGDEL KL+KS SF  R+  + +          + ++EPDVSWV  LVK+
Sbjct:  498 QRSQSFIERNN-----GLNHHPAISSMTTTCLNDWGSLDGKLDWSVQGDELQKLRKSTSFRLRAGGMESRLPN----EGTGLEEPDVSWVEPLVKE 584          
BLAST of CX296521 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 43/103 (41.75%), Postives = 56/103 (54.37%), Query Frame = 1
Query:  319 TKRSQSFIDRGAVTSRAGLSMVSNPPTMRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQ 627
            T RS S  D G   +RA   +V +P    SS+ S W SP G  DWGV G+EL KL++S+SF  RS                  D+PD+SWV++LVK+  PE Q
Sbjct:  623 TMRSLSSRDLGPSAARAS-GVVGSP---LSSSWSKWGSPSGTPDWGVNGEELGKLRRSSSFELRSGG----------------DDPDLSWVHTLVKESPPEKQ 705          
The following BLAST results are available for this feature:
BLAST of CX296521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
C3H33_ORYSJ1.825e-2340.78Zinc finger CCCH domain-containing protein 33 OS=O... [more]
C3H29_ARATH8.478e-2137.11Zinc finger CCCH domain-containing protein 29 OS=A... [more]
C3H47_ARATH3.938e-1836.51Zinc finger CCCH domain-containing protein 47 OS=A... [more]
C3H66_ARATH1.311e-1344.79Zinc finger CCCH domain-containing protein 66 OS=A... [more]
C3H24_ORYSJ2.093e-1141.75Zinc finger CCCH domain-containing protein 24 OS=O... [more]
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Properties
Property NameValue
Genbank descriptionC05142D04SK FerrChloL1 Citrus clementina cDNA clone C05142D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296521 ID=CX296521; Name=CX296521; organism=Citrus clementina; type=EST; length=680bp
TCTAGTCTCTCCTCCCCATCTTCTTGGAGCAAGGAATACAGTAGGATTGG
AGATGTGAATCGAAACCTTGACGAAGTTTTCGAATCTCTTGATCCTTCTA
TGTTGTCTCAGTTGCAGGGAATGTCACAGAAACAATCAACGCCAACTCAG
TTGCAATCTCCAACCGGGCTTCAAATGCGCCAAAACATGAACCAACTTCG
TGCAAGCTATCCAGCTGCCAACCTCTCATCCTCTCCAGTGAGAAAACCTT
CATCATTTGGGTTTGATTCTTCGGCTGCAGTGGCAGCTGCAGTGATGAAT
TCAAGGTCTTCTGCCTTTACAAAGCGAAGCCAGAGTTTTATTGATCGTGG
AGCAGTGACCAGTCGTGCTGGTCTCAGCATGGTTTCTAACCCTCCGACTA
TGAGATCCTCTAATCTATCAGATTGGAGCTCCCCTGATGGGAAACTGGAT
TGGGGAGTTCAAGGAGATGAGCTGAACAAACTTAAGAAGTCAGCTTCATT
CGGGTTTCGTAGCAACAATATAACAACCCCAACAACAAAAGGCTTCACTC
CATCATCATCGAATGTTGATGAGCCAGATGTGTCCTGGGTTAATTCCTTG
GTGAAAGATGTTACGCCAGAAGGACAGGGATTGTTTGGTGCAGAGAAGCA
GCATACATCCATGGATGGAGCAATGTACAT
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