CX296521
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296521 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.825e-23 Identity = 73/179 (40.78%), Postives = 90/179 (50.28%), Query Frame = 1 Query: 73 EVFESLDPSMLSQLQGMSQKQSTPTQLQSPTGLQMRQNMNQLRASYPAANLSSSPVRKPXXXXXXXXXXXXXXXXXXXXXXFTKRSQSFIDRGAVTSRAGLSMVSNPPTMRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKD 609 ++ S+DP+MLSQL +S KQ+ S A ++ +SP+ F KRSQSFIDRG + A S++S T S LSDW SPDGKLDWGVQGDEL+KL+KSASF FR + T + EPDVSWVNSLVKD Sbjct: 423 DLLGSVDPAMLSQLHALSLKQAGDMPAYSSM------------ADTTQMHMPTSPMVGGANTAFGLDHSMAKAIMSSRASAFAKRSQSFIDRGG-RAPAARSLMSPATTGAPSILSDWGSPDGKLDWGVQGDELHKLRKSASFAFRGQSAMPVAT------HAAAAEPDVSWVNSLVKD 582
BLAST of CX296521 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 8.478e-21 Identity = 72/194 (37.11%), Postives = 90/194 (46.39%), Query Frame = 1 Query: 43 RIGDVN-RNLDEVFESLDPSMLSQLQGMSQKQSTPTQLQSPTGLQMRQNMNQLRASYPAANLSSSPVRKPXXXXXXXXXXXXXXXXXXXXXXFTKRSQSFIDRGAVTSRAGLSMVSNPPTMRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPE 621 R+GD+ NL+E F S D + + QLQ S+ MN YP SSPVR+P F KRS SF P +SN+SDW SP+GKL+WG+Q DELNKL++SASFG NN + + P+ DEPDVSWVNSLVK+ PE Sbjct: 412 RLGDLKPSNLEETFGSYDSASVMQLQSPSR----------------HSQMNH----YP-----SSPVRQPPPHGFESSAAMAAAVMNARSSAFAKRSLSF-----------------KPAPVASNVSDWGSPNGKLEWGMQRDELNKLRRSASFGIHGNNNNSVS----RPARDYSDEPDVSWVNSLVKENAPE 559
BLAST of CX296521 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.938e-18 Identity = 69/189 (36.51%), Postives = 90/189 (47.62%), Query Frame = 1 Query: 118 GMSQKQSTPTQLQSPT-GLQMRQNMNQLRASYPAANLSSSPVRKPXXXXXXXXXXXXXXXXXXXXXX-FTKRSQSFIDRGAVTSRAGLSMVSNPPTMRS--SNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQHTSMDGA 672 G + +++ + + SP+ QM QNMNQ YP SSPVR+P F KRS SF P T + SNLSDW SP+GKL+WG++G+ELNK+++S SFG NN + DEPDVSWVNSLVKD T + FG ++ M A Sbjct: 411 GNNVEETFGSYVSSPSRNSQMGQNMNQ---HYP-----SSPVRQPPSQHGFESSAAAAVAVMKARSTAFAKRSLSF----------------KPATQAAPQSNLSDWGSPNGKLEWGMKGEELNKMRRSVSFGIHGNN-------NNNAARDYRDEPDVSWVNSLVKDSTVVSERSFGMNERVRIMSWA 568
BLAST of CX296521 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13 Identity = 43/96 (44.79%), Postives = 58/96 (60.42%), Query Frame = 1 Query: 322 KRSQSFIDRGAVTSRAGLSMVSNPPTMRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKD 609 +RSQSFI+R GL+ +M ++ L+DW S DGKLDW VQGDEL KL+KS SF R+ + + + ++EPDVSWV LVK+ Sbjct: 498 QRSQSFIERNN-----GLNHHPAISSMTTTCLNDWGSLDGKLDWSVQGDELQKLRKSTSFRLRAGGMESRLPN----EGTGLEEPDVSWVEPLVKE 584
BLAST of CX296521 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11 Identity = 43/103 (41.75%), Postives = 56/103 (54.37%), Query Frame = 1 Query: 319 TKRSQSFIDRGAVTSRAGLSMVSNPPTMRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQ 627 T RS S D G +RA +V +P SS+ S W SP G DWGV G+EL KL++S+SF RS D+PD+SWV++LVK+ PE Q Sbjct: 623 TMRSLSSRDLGPSAARAS-GVVGSP---LSSSWSKWGSPSGTPDWGVNGEELGKLRRSSSFELRSGG----------------DDPDLSWVHTLVKESPPEKQ 705 The following BLAST results are available for this feature:
BLAST of CX296521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX296521 ID=CX296521; Name=CX296521; organism=Citrus clementina; type=EST; length=680bpback to top |