CX296525

Overview
NameCX296525
Unique NameCX296525
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length224
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig514 contig Ccv1_Contig514:777..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.414e-34
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAVKAIS AIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL
Sbjct:  611 QDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 684          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.866e-33
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAV+AIS AIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL
Sbjct:  611 QDEAVQAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 684          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.157e-33
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAVKAIS AIRRARVGLKNPNRPIASFIFSGPTGVGKSELAK+LA YYFGSEEAMIRLDMSEFMERHTVSKL
Sbjct:  614 QDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKSLATYYFGSEEAMIRLDMSEFMERHTVSKL 687          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.210e-32
Identity = 71/74 (95.95%), Postives = 71/74 (95.95%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAVKAIS AIRRARVGLKNPNRPIASFIF GPTGVGKSELAKALAAYYFG EEAMIRLDMSEFMERHTVSKL
Sbjct:  559 QDEAVKAISRAIRRARVGLKNPNRPIASFIFFGPTGVGKSELAKALAAYYFGCEEAMIRLDMSEFMERHTVSKL 632          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.082e-31
Identity = 65/74 (87.84%), Postives = 71/74 (95.95%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAV A+S AIRRARVGLKNPNRPIASFIFSGPTGVGK+EL KALA+Y+FGSEEAM+RLDMSE+MERHTVSKL
Sbjct:  514 QDEAVVAVSKAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEEAMVRLDMSEYMERHTVSKL 587          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.302e-30
Identity = 63/74 (85.14%), Postives = 71/74 (95.95%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q+EAV A+S AIRRARVGLKNPNRPIASFIFSGPTGVGK+EL KA+A+Y+FGSEEAM+RLDMSE+MERHTVSKL
Sbjct:  547 QNEAVIAVSKAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKAMASYFFGSEEAMVRLDMSEYMERHTVSKL 620          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.619e-30
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAV A+S AIRRARVGLKNPNRPIASFIFSGPTGVGK+EL KALA+Y+FGSE +MIRLDMSE+MERHTVSKL
Sbjct:  517 QDEAVVAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEASMIRLDMSEYMERHTVSKL 590          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.338e-30
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAV A+S AIRRARVGLKNPNRPIASFIFSGPTGVGK+EL KALA+Y+FGSE +MIRLDMSE+MERHTVSKL
Sbjct:  517 QDEAVIAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEASMIRLDMSEYMERHTVSKL 590          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: ERD1_ARATH (ERD1 protein, chloroplastic OS=Arabidopsis thaliana GN=ERD1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.295e-26
Identity = 57/74 (77.03%), Postives = 68/74 (91.89%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAV AIS A++R+RVGLK+P+RPIA+ +F GPTGVGK+EL KALAA YFGSEE+M+RLDMSE+MERHTVSKL
Sbjct:  632 QDEAVAAISRAVKRSRVGLKDPDRPIAAMLFCGPTGVGKTELTKALAANYFGSEESMLRLDMSEYMERHTVSKL 705          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_ODOSI (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Odontella sinensis GN=clpC PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.191e-25
Identity = 53/74 (71.62%), Postives = 67/74 (90.54%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q  A+ ++S AIRRARVGL+NP+RPIASFIF+GPTGVGK+EL KAL+ Y FG+E++MIRLDMSE+ME+HTV+KL
Sbjct:  528 QHHAIVSVSKAIRRARVGLRNPDRPIASFIFAGPTGVGKTELTKALSEYMFGNEDSMIRLDMSEYMEKHTVAKL 601          
The following BLAST results are available for this feature:
BLAST of CX296525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
CLPAB_SOLLC6.414e-3498.65ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PEA1.866e-3397.30ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAA_SOLLC4.157e-3395.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_BRANA1.210e-3295.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_GUITH5.082e-3187.84ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_CYACA4.302e-3085.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORYE5.619e-3086.49ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORPU7.338e-3086.49ATP-dependent Clp protease ATP-binding subunit clp... [more]
ERD1_ARATH1.295e-2677.03ERD1 protein, chloroplastic OS=Arabidopsis thalian... [more]
CLPC_ODOSI3.191e-2571.62ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC05142E01SK FerrChloL1 Citrus clementina cDNA clone C05142E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296525 ID=CX296525; Name=CX296525; organism=Citrus clementina; type=EST; length=224bp
GTCAGGACGAAGCTGTCAAAGCTATTAGTCCTGCTATCCGGCGTGCACGT
GTTGGACTCAAAAACCCCAATCGACCAATTGCTAGTTTCATCTTTTCTGG
TCCAACTGGTGTCGGGAAGTCTGAACTGGCCAAAGCACTGGCTGCCTATT
ACTTTGGCTCAGAGGAGGCCATGATCAGGCTTGATATGAGTGAGTTCATG
GAAAGACACACTGTTTCCAAGCTC
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