CX296532

Overview
NameCX296532
Unique NameCX296532
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length598
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296532_ssr427 microsatellite CX296532_ssr427:427..444. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296532 vs. ExPASy Swiss-Prot
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.294e-13
Identity = 45/115 (39.13%), Postives = 54/115 (46.96%), Query Frame = -1 
Query:  224 HECSICHKSFPPGQALGGHKRCHYEGGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFSEGGGSTSQRGFDLNLPALPEF-W------------SQEVEFPLPAKKPKLL 529
            H CSIC K FP GQALGGHKR HY+GG+                                   S G GS++ R FDLN+PA+PEF W             +EV+ PL  KKP+LL
Sbjct:  160 HRCSICQKEFPTGQALGGHKRKHYDGGVGAAASSTELLAAAAAESEVG---------------STGNGSSAARAFDLNIPAVPEFVWRPCAKGKMMWEDDEEVQSPLAFKKPRLL 259
The following BLAST results are available for this feature:
BLAST of CX296532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFP1_WHEAT2.294e-1339.13Zinc finger protein 1 OS=Triticum aestivum PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionC05142G01SK FerrChloL1 Citrus clementina cDNA clone C05142G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296532 ID=CX296532; Name=CX296532; organism=Citrus clementina; type=EST; length=598bp
AGGCCTCGTGCCGAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTGAAAGAATCACCCCTACAAATTAAGAACAAATTCTCTGTACAG
TCTACGGGGTACACAATCCATCAAAACAAGAATAATCCAAAAGCAATCAA
TTAAAATTTAAAAATTAAAACTTGATAATTCTATAGTCGTAATAAATCAA
TCTTCTAACGAAAAGTAGTGCATCAACAACTTGGGTTTCTTGGCCGGCAA
CGGAAACTCAACTTCCTGTGACCAAAACTCCGGCAACGCCGGCAAGTTCA
GGTCAAATCCACGTTGACTGGTGCTCCCTCCGCCCTCCGAAAACGTCACC
GCACTTGCACCAACGCTAGCGCTACCACTAGTAACAACGGCGCTATTATT
ATTACTTTTATTATTATTGCCGCTGCTGTTGTTGTTGTTGTTGTTGATGC
CCCCTTCATAGTGACACCGCTTGTGGCCTCCTAGAGCTTGTCCAGGGGGA
AAAGACTTGTGACAAATAGAGCACTCGTGGGTCCTACCGCCGCTTCCGCT
GCTCGCCGTTGCTGACGGTGGTGGGGTGACGTCACTGGCGGCTGCGGC
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