CX296540

Overview
NameCX296540
Unique NameCX296540
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length476
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13299 contig Ccv1_Contig13299:781..1256. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 7.066e-63
Identity = 115/142 (80.99%), Postives = 128/142 (90.14%), Query Frame = 1
Query:   22 HREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFC-QSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHDGPEKHAGVLYGLEVY 444
            +R EGV+S RFAELMMSSGL+CNESVSWVTFHSAYDFGYLVKILTRR LP  L EFL +LR FFG+ +YDVKHIMRFC Q LYGGLDRVAR+L+V+RAVGKCHQAGSDSLLTW AFQ++RD+YFV DG EKHAGVLYGLEV+
Sbjct:  137 NRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTWQAFQRMRDLYFVEDGAEKHAGVLYGLEVF 278          
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 1.740e-61
Identity = 110/139 (79.14%), Postives = 125/139 (89.93%), Query Frame = 1
Query:   31 EGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQ-SLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHDGPEKHAGVLYGLEVY 444
            +GV+S RFAELMMSSGLVCNE VSWVTFHSAYDFGYL+KILTRR LP  L EF  V+RV FG  +YDVKH+M+FC+  L+GGLDRVARTL+V+RAVGKCHQAGSDSLLTWHAFQ++RD+YFV DGPEKHAGVLYGLEV+
Sbjct:  142 DGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLTWHAFQRMRDLYFVQDGPEKHAGVLYGLEVF 280          
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.214e-38
Identity = 79/138 (57.25%), Postives = 108/138 (78.26%), Query Frame = 1
Query:   31 EGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHDGP-EKHAGVLYGLEV 441
            +G+DS RFAEL+MSSG+V NE+V WVTFHS YDFGYL+K+LT ++LP    +F  ++ V+F   +YD+KH+M+FC SL+GGL+++A  L+V R VG CHQAGSDSLLT   F+K+++ +FV  GP  K++GVLYGL V
Sbjct:  134 DGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCTFRKLKENFFV--GPLHKYSGVLYGLGV 267          
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 2.070e-38
Identity = 79/140 (56.43%), Postives = 107/140 (76.43%), Query Frame = 1
Query:   22 HREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHDGPEKHAGVLYGLEV 441
            + E G+DS RFAEL+MSSG+V NE+V WVTFHS YDFGYL+K+LT ++LP     F  ++ V+F   +YD+KH+M+FC SL+GGL+++A  LDV R VG CHQAGSDSLLT   F+K+++ +F+    EK++GVLYGL V
Sbjct:  132 NNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFEMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSCTFRKLQENFFI-GSMEKYSGVLYGLGV 268          
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 7.867e-38
Identity = 78/138 (56.52%), Postives = 102/138 (73.91%), Query Frame = 1
Query:   28 EEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHDGPEKHAGVLYGLEV 441
            E+G+D VRF ELMMSSG+V N+++SWVTFH  YDFGYLVK+LT + LP    +F  +L V+F   +YD+KH+M FC  L+GGL+R+A  + V R VG CHQAGSDSLLT  +F+K+++ YF     EK+ GVLYGL V
Sbjct:  133 EKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFKLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLTLGSFRKLKERYF-PGSTEKYTGVLYGLGV 267          
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CNOT7_XENLA (CCR4-NOT transcription complex subunit 7 OS=Xenopus laevis GN=cnot7 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 7.620e-33
Identity = 73/139 (52.52%), Postives = 98/139 (70.50%), Query Frame = 1
Query:   22 HREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFV-HDGPEKHAGVLYGL 435
            H EEG+++  FAEL M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  +LR+FF   IYDVK++M+ C++L GGL  VA  L++ R +G  HQAGSDSLLT  AF K+R+++F  H    K+ G LYGL
Sbjct:  126 HEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVEQDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGL 262          
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CNOT7_MOUSE (CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 9.952e-33
Identity = 73/139 (52.52%), Postives = 99/139 (71.22%), Query Frame = 1
Query:   22 HREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFV-HDGPEKHAGVLYGL 435
            H EEG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  +LR+FF   IYDVK++M+ C++L GGL  VA  L++ R +G  HQAGSDSLLT  AF K+R+++F  H    K+ G LYGL
Sbjct:  126 HEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGL 262          
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CNOT7_HUMAN (CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7 PE=1 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 9.952e-33
Identity = 73/139 (52.52%), Postives = 99/139 (71.22%), Query Frame = 1
Query:   22 HREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFV-HDGPEKHAGVLYGL 435
            H EEG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  +LR+FF   IYDVK++M+ C++L GGL  VA  L++ R +G  HQAGSDSLLT  AF K+R+++F  H    K+ G LYGL
Sbjct:  126 HEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGL 262          
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CNOT7_CHICK (CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 9.952e-33
Identity = 73/139 (52.52%), Postives = 99/139 (71.22%), Query Frame = 1
Query:   22 HREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFV-HDGPEKHAGVLYGL 435
            H EEG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  +LR+FF   IYDVK++M+ C++L GGL  VA  L++ R +G  HQAGSDSLLT  AF K+R+++F  H    K+ G LYGL
Sbjct:  126 HEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGL 262          
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CNOT7_BOVIN (CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 9.952e-33
Identity = 73/139 (52.52%), Postives = 99/139 (71.22%), Query Frame = 1
Query:   22 HREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFV-HDGPEKHAGVLYGL 435
            H EEG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  +LR+FF   IYDVK++M+ C++L GGL  VA  L++ R +G  HQAGSDSLLT  AF K+R+++F  H    K+ G LYGL
Sbjct:  126 HEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGL 262          
The following BLAST results are available for this feature:
BLAST of CX296540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
CAF1K_ARATH7.066e-6380.99Probable CCR4-associated factor 1 homolog 11 OS=Ar... [more]
CAF1I_ARATH1.740e-6179.14Probable CCR4-associated factor 1 homolog 9 OS=Ara... [more]
CAF1F_ARATH1.214e-3857.25Probable CCR4-associated factor 1 homolog 6 OS=Ara... [more]
CAF1G_ARATH2.070e-3856.43Probable CCR4-associated factor 1 homolog 7 OS=Ara... [more]
CAF1J_ARATH7.867e-3856.52Probable CCR4-associated factor 1 homolog 10 OS=Ar... [more]
CNOT7_XENLA7.620e-3352.52CCR4-NOT transcription complex subunit 7 OS=Xenopu... [more]
CNOT7_MOUSE9.952e-3352.52CCR4-NOT transcription complex subunit 7 OS=Mus mu... [more]
CNOT7_HUMAN9.952e-3352.52CCR4-NOT transcription complex subunit 7 OS=Homo s... [more]
CNOT7_CHICK9.952e-3352.52CCR4-NOT transcription complex subunit 7 OS=Gallus... [more]
CNOT7_BOVIN9.952e-3352.52CCR4-NOT transcription complex subunit 7 OS=Bos ta... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05142H02SK FerrChloL1 Citrus clementina cDNA clone C05142H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296540 ID=CX296540; Name=CX296540; organism=Citrus clementina; type=EST; length=476bp
GATTCGGCCGAGGTTTGATCGCACAGGGAGGAAGGCGTTGACTCGGTTCG
GTTCGCCGAGTTGATGATGTCGTCGGGACTCGTCTGTAACGAGTCGGTGA
GTTGGGTCACGTTCCACAGCGCGTACGATTTCGGGTACCTGGTTAAGATC
CTCACGCGCCGGAGCTTGCCCAGTGGCCTAGACGAGTTTTTGACGGTCCT
CAGGGTGTTTTTCGGTAACAACATTTATGACGTCAAACACATTATGCGGT
TCTGTCAGAGCTTGTACGGTGGGCTGGACCGAGTGGCTCGGACGTTGGAT
GTGAGCCGGGCGGTCGGGAAGTGCCACCAGGCCGGTTCGGATAGCCTTCT
GACCTGGCATGCCTTTCAAAAAATTAGGGATGTGTATTTCGTCCACGACG
GACCGGAGAAACATGCCGGCGTATTATATGGACTAGAAGTGTACTAAATT
TAATTTTGCCCAAGGGGGGGCCCGGT
back to top